JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMIGD2_chr19_4287227_4307389	0/0	c0016	837	1	1	0	0	0	0	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	c0017	837	1	0	1	0	0	0	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	c0018	837	1	1	0	0	0	0	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	c0019	837	1	1	0	0	0	0	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	c0020	837	1	1	0	0	0	0	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	c0021	837	1	1	0	0	0	0	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	c0022	837	1	0	1	0	0	0	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD2_chr19_4287227_4307389	0/0	c0023	837	1	0	0	1	0	0	copy fasta	TMIGD2	chr19	4287227	4307389
TMIGD3_chr1_111478348_111508633	1/1	c0001	1044	360	72	74	159	11	42	copy fasta	TMIGD3	chr1	111478348	111508633
TMIGD3_chr1_111478348_111508633	0/0	c0002	1044	82	22	2	51	1	6	copy fasta	TMIGD3	chr1	111478348	111508633
TMIGD3_chr1_111478348_111508633	0/0	c0003	1044	7	0	4	3	0	0	copy fasta	TMIGD3	chr1	111478348	111508633
TMIGD3_chr1_111478348_111508633	0/0	c0004	1044	3	0	0	3	0	0	copy fasta	TMIGD3	chr1	111478348	111508633
TMIGD3_chr1_111478348_111508633	0/0	c0005	1044	2	2	0	0	0	0	copy fasta	TMIGD3	chr1	111478348	111508633
TMIGD3_chr1_111478348_111508633	0/0	c0006	1044	2	2	0	0	0	0	copy fasta	TMIGD3	chr1	111478348	111508633
TMIGD3_chr1_111478348_111508633	0/0	c0007	1044	1	0	0	1	0	0	copy fasta	TMIGD3	chr1	111478348	111508633
TMIGD3_chr1_111478348_111508633	0/0	c0008	1044	1	0	0	1	0	0	copy fasta	TMIGD3	chr1	111478348	111508633
TMIGD3_chr1_111478348_111508633	0/0	c0009	1044	1	0	0	1	0	0	copy fasta	TMIGD3	chr1	111478348	111508633
TMIGD3_chr1_111478348_111508633	0/0	c0010	1044	1	1	0	0	0	0	copy fasta	TMIGD3	chr1	111478348	111508633
TMIGD3_chr1_111478348_111508633	0/0	c0011	1044	1	0	0	1	0	0	copy fasta	TMIGD3	chr1	111478348	111508633
TMIGD3_chr1_111478348_111508633	0/0	c0012	1044	1	0	0	1	0	0	copy fasta	TMIGD3	chr1	111478348	111508633
TMIGD3_chr1_111478348_111508633	0/0	c0013	1044	1	1	0	0	0	0	copy fasta	TMIGD3	chr1	111478348	111508633
TMIGD3_chr1_111478348_111508633	0/0	c0014	1044	1	0	0	1	0	0	copy fasta	TMIGD3	chr1	111478348	111508633
TMLHE_chrX_155484011_155617952	1/1	c0001	1266	209	53	38	84	7	25	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	c0002	1266	2	2	0	0	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	c0003	1266	1	1	0	0	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	c0004	1268	1	1	0	0	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	c0005	1271	1	0	0	1	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	c0006	1267	1	1	0	0	0	0	copy fasta	TMLHE	chrX	155484011	155617952
TMLHE_chrX_155484011_155617952	0/0	c0007	1266	1	0	0	0	0	1	copy fasta	TMLHE	chrX	155484011	155617952
TMOD1_chr9_97496666_97606743	1/1	c0001	1080	325	81	66	128	14	34	copy fasta	TMOD1	chr9	97496666	97606743
TMOD1_chr9_97496666_97606743	0/0	c0002	1080	2	0	0	0	0	2	copy fasta	TMOD1	chr9	97496666	97606743
TMOD1_chr9_97496666_97606743	0/0	c0003	1080	2	2	0	0	0	0	copy fasta	TMOD1	chr9	97496666	97606743
TMOD1_chr9_97496666_97606743	0/0	c0004	1080	2	2	0	0	0	0	copy fasta	TMOD1	chr9	97496666	97606743
TMOD1_chr9_97496666_97606743	0/0	c0005	1080	2	0	0	2	0	0	copy fasta	TMOD1	chr9	97496666	97606743
TMOD1_chr9_97496666_97606743	0/0	c0006	1080	1	1	0	0	0	0	copy fasta	TMOD1	chr9	97496666	97606743
TMOD2_chr15_51746597_51821363	1/1	c0001	1056	366	90	67	161	10	36	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	c0002	1056	5	0	5	0	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	c0003	1056	2	0	0	0	0	2	copy fasta	TMOD2	chr15	51746597	51821363
TMOD2_chr15_51746597_51821363	0/0	c0004	1056	1	0	0	1	0	0	copy fasta	TMOD2	chr15	51746597	51821363
TMOD3_chr15_51824653_51920725	1/1	c0001	1059	368	86	73	160	10	37	copy fasta	TMOD3	chr15	51824653	51920725
TMOD3_chr15_51824653_51920725	0/0	c0002	1059	3	0	3	0	0	0	copy fasta	TMOD3	chr15	51824653	51920725
TMOD3_chr15_51824653_51920725	0/0	c0003	1059	1	0	0	0	0	1	copy fasta	TMOD3	chr15	51824653	51920725
TMOD4_chr1_151164987_151180981	1/1	c0001	1038	389	90	66	175	14	42	copy fasta	TMOD4	chr1	151164987	151180981
TMOD4_chr1_151164987_151180981	0/0	c0002	1038	4	4	0	0	0	0	copy fasta	TMOD4	chr1	151164987	151180981
TMOD4_chr1_151164987_151180981	0/0	c0003	1038	3	0	0	0	1	2	copy fasta	TMOD4	chr1	151164987	151180981
TMOD4_chr1_151164987_151180981	0/0	c0004	1038	2	2	0	0	0	0	copy fasta	TMOD4	chr1	151164987	151180981
TMOD4_chr1_151164987_151180981	0/0	c0005	1038	2	0	0	2	0	0	copy fasta	TMOD4	chr1	151164987	151180981
TMOD4_chr1_151164987_151180981	0/0	c0006	1038	2	0	0	2	0	0	copy fasta	TMOD4	chr1	151164987	151180981
TMOD4_chr1_151164987_151180981	0/0	c0007	1038	1	0	0	0	1	0	copy fasta	TMOD4	chr1	151164987	151180981
TMOD4_chr1_151164987_151180981	0/0	c0008	1038	1	1	0	0	0	0	copy fasta	TMOD4	chr1	151164987	151180981