JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMOD4_chr1_151164987_151180981	0/0	c0009	1038	1	1	0	0	0	0	copy fasta	TMOD4	chr1	151164987	151180981
TMOD4_chr1_151164987_151180981	0/0	c0010	997	1	0	0	1	0	0	copy fasta	TMOD4	chr1	151164987	151180981
TMPO_chr12_98510590_98555351	1/1	c0001	1365	366	91	66	148	17	42	copy fasta	TMPO	chr12	98510590	98555351
TMPO_chr12_98510590_98555351	0/0	c0002	1365	4	1	2	0	1	0	copy fasta	TMPO	chr12	98510590	98555351
TMPO_chr12_98510590_98555351	0/0	c0003	1365	2	2	0	0	0	0	copy fasta	TMPO	chr12	98510590	98555351
TMPO_chr12_98510590_98555351	0/0	c0004	1365	2	0	2	0	0	0	copy fasta	TMPO	chr12	98510590	98555351
TMPO_chr12_98510590_98555351	0/0	c0005	1365	1	0	0	1	0	0	copy fasta	TMPO	chr12	98510590	98555351
TMPO_chr12_98510590_98555351	0/0	c0006	1365	1	0	0	1	0	0	copy fasta	TMPO	chr12	98510590	98555351
TMPPE_chr3_33085422_33102146	1/1	c0001	1362	429	83	74	210	18	42	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	c0002	1362	18	4	0	12	0	2	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	c0003	1362	10	0	10	0	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	c0004	1359	5	5	0	0	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	c0005	1362	2	2	0	0	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	c0006	1362	1	0	0	1	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPPE_chr3_33085422_33102146	0/0	c0007	1362	1	0	0	1	0	0	copy fasta	TMPPE	chr3	33085422	33102146
TMPRSS11A_chr4_67904395_67968493	0/0	c0001	1257	174	11	28	109	5	21	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	c0002	1257	61	7	9	32	3	10	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	c0003	1257	37	10	3	19	1	4	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	c0004	1257	27	26	1	0	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	c0005	1257	18	0	6	10	1	1	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	c0006	1257	17	16	1	0	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/1	c0007	1257	14	1	3	3	4	2	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	c0008	1257	9	6	2	0	0	1	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	c0009	1257	8	6	0	2	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	c0010	1257	7	0	5	2	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	c0011	1257	6	4	0	2	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	c0012	1257	3	3	0	0	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	c0013	1257	2	0	0	2	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	1/0	c0014	1257	2	1	0	0	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	c0015	1257	1	0	0	0	0	1	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	c0016	1257	1	0	0	1	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	c0017	1257	1	1	0	0	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	c0018	1257	1	0	1	0	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	c0019	1257	1	1	0	0	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	c0020	1257	1	0	1	0	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	c0021	1257	1	0	0	0	0	1	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	c0022	1257	1	1	0	0	0	0	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11A_chr4_67904395_67968493	0/0	c0023	1257	1	0	0	0	0	1	copy fasta	TMPRSS11A	chr4	67904395	67968493
TMPRSS11B_chr4_68221653_68250694	0/1	c0001	1251	275	27	47	158	12	30	copy fasta	TMPRSS11B	chr4	68221653	68250694
TMPRSS11B_chr4_68221653_68250694	0/0	c0002	1251	78	46	25	0	4	3	copy fasta	TMPRSS11B	chr4	68221653	68250694
TMPRSS11B_chr4_68221653_68250694	0/0	c0003	1251	9	8	1	0	0	0	copy fasta	TMPRSS11B	chr4	68221653	68250694
TMPRSS11B_chr4_68221653_68250694	0/0	c0004	1251	4	4	0	0	0	0	copy fasta	TMPRSS11B	chr4	68221653	68250694
TMPRSS11B_chr4_68221653_68250694	0/0	c0005	1251	3	3	0	0	0	0	copy fasta	TMPRSS11B	chr4	68221653	68250694
TMPRSS11B_chr4_68221653_68250694	1/0	c0006	1251	3	2	0	0	0	0	copy fasta	TMPRSS11B	chr4	68221653	68250694
TMPRSS11B_chr4_68221653_68250694	0/0	c0007	1251	1	1	0	0	0	0	copy fasta	TMPRSS11B	chr4	68221653	68250694
TMPRSS11B_chr4_68221653_68250694	0/0	c0008	1251	1	0	0	1	0	0	copy fasta	TMPRSS11B	chr4	68221653	68250694
TMPRSS11B_chr4_68221653_68250694	0/0	c0009	1251	1	1	0	0	0	0	copy fasta	TMPRSS11B	chr4	68221653	68250694
TMPRSS11B_chr4_68221653_68250694	0/0	c0010	1251	1	1	0	0	0	0	copy fasta	TMPRSS11B	chr4	68221653	68250694
TMPRSS11B_chr4_68221653_68250694	0/0	c0011	1251	1	0	0	0	0	1	copy fasta	TMPRSS11B	chr4	68221653	68250694
TMPRSS11B_chr4_68221653_68250694	0/0	c0012	1251	1	0	1	0	0	0	copy fasta	TMPRSS11B	chr4	68221653	68250694