JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMPRSS15_chr21_18264116_18408785	0/0	c0025	3060	2	2	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0026	3060	2	2	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0027	3060	1	0	1	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0028	3060	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0029	3060	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0030	3060	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0031	3060	1	0	0	0	1	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0032	3060	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0033	3060	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0034	3060	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0035	3060	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0036	3060	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0037	3060	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0038	3060	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0039	3060	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0040	3060	1	0	0	0	0	1	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0041	3060	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0042	3060	1	0	0	1	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0043	3060	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0044	3060	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0045	3060	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0046	3060	1	0	0	0	0	1	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0047	3060	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0048	3060	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0049	3060	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0050	3060	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0051	3060	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0052	3060	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0053	3060	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0054	3060	1	0	0	1	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0055	3060	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0056	3060	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0057	3060	1	0	0	0	0	1	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0058	3060	1	0	1	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0059	3060	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0060	3060	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0061	3060	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0062	3060	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0063	3060	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0064	3060	1	0	1	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0065	3060	1	0	0	0	0	1	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0066	3060	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0067	3060	1	0	0	1	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0068	3060	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0069	3060	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0070	3060	1	1	0	0	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS15_chr21_18264116_18408785	0/0	c0071	3060	1	0	0	1	0	0	copy fasta	TMPRSS15	chr21	18264116	18408785
TMPRSS2_chr21_41459305_41513158	1/0	c0001	1479	145	28	28	72	2	14	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/1	c0002	1479	70	30	19	1	5	14	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	c0003	1479	31	3	5	16	3	4	copy fasta	TMPRSS2	chr21	41459305	41513158