JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMPRSS2_chr21_41459305_41513158	0/0	c0004	1479	25	10	3	7	0	5	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	c0005	1479	23	0	0	22	1	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	c0006	1479	21	6	2	10	1	2	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	c0007	1479	17	2	0	13	0	2	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	c0008	1479	13	7	4	0	0	2	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	c0009	1479	8	4	2	2	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	c0010	1479	6	0	4	2	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	c0011	1479	4	3	0	1	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	c0012	1479	2	0	2	0	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	c0013	1479	2	2	0	0	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	c0014	1479	2	0	1	0	0	1	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	c0015	1479	1	0	0	1	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	c0016	1479	1	0	0	1	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	c0017	1479	1	1	0	0	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	c0018	1479	1	0	1	0	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	c0019	1479	1	1	0	0	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	c0020	1479	1	0	0	0	0	1	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	c0021	1479	1	0	1	0	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	c0022	1479	1	0	1	0	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	c0023	1479	1	0	1	0	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	c0024	1479	1	0	0	0	0	1	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	c0025	1479	1	0	0	1	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	c0026	1494	1	0	0	1	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS2_chr21_41459305_41513158	0/0	c0027	1479	1	1	0	0	0	0	copy fasta	TMPRSS2	chr21	41459305	41513158
TMPRSS3_chr21_42366890_42401052	1/0	c0001	1362	136	4	34	59	11	27	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	c0002	1362	132	54	27	37	3	11	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	c0003	1362	66	3	5	49	0	9	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	c0004	1362	26	0	3	22	1	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	c0005	1362	23	1	1	21	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	c0006	1362	22	1	0	21	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/1	c0007	1362	21	15	3	1	0	1	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	c0008	1362	11	6	5	0	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	c0009	1362	6	6	0	0	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	c0010	1362	5	4	1	0	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	c0011	1362	3	0	0	3	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	c0012	1362	3	1	1	0	1	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	c0013	1362	2	1	1	0	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	c0014	1362	2	0	1	0	1	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	c0015	1362	2	0	2	0	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	c0016	1362	1	0	0	0	1	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	c0017	1362	1	0	0	1	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	c0018	1362	1	1	0	0	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	c0019	1362	1	0	0	1	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	c0020	1362	1	1	0	0	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	c0021	1362	1	0	0	1	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	c0022	1362	1	1	0	0	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	c0023	1362	1	0	1	0	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	c0024	1362	1	0	0	1	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	c0025	1362	1	0	1	0	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052
TMPRSS3_chr21_42366890_42401052	0/0	c0026	1362	1	0	0	1	0	0	copy fasta	TMPRSS3	chr21	42366890	42401052