JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMPRSS6_chr22_37060436_37114713	0/0	c0064	2409	1	1	0	0	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	c0065	2409	1	0	0	1	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	c0066	2409	1	1	0	0	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	c0067	2409	1	1	0	0	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	c0068	2409	1	0	0	0	0	1	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	c0069	2409	1	0	1	0	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	c0070	2409	1	1	0	0	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	c0071	2409	1	0	0	0	0	1	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	c0072	2409	1	0	1	0	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	c0073	2409	1	0	0	0	0	1	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	c0074	2409	1	1	0	0	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	c0075	2409	1	0	1	0	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	c0076	2409	1	0	0	1	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS6_chr22_37060436_37114713	0/0	c0077	2409	1	0	1	0	0	0	copy fasta	TMPRSS6	chr22	37060436	37114713
TMPRSS7_chr3_112029736_112086269	0/1	c0001	2532	201	17	55	96	9	23	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0002	2532	56	4	9	39	0	4	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0003	2532	31	4	1	15	0	11	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0004	2532	16	10	5	0	0	1	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	1/0	c0005	2532	11	10	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0006	2532	10	0	0	10	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0007	2532	9	3	1	3	2	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0008	2532	6	2	2	2	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0009	2532	5	0	0	2	0	3	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0010	2532	5	0	3	0	2	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0011	2532	4	0	0	4	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0012	2532	4	0	0	1	0	3	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0013	2532	4	4	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0014	2532	4	4	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0015	2532	3	3	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0016	2532	3	1	1	1	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0017	2532	3	2	1	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0018	2532	3	3	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0019	2532	3	3	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0020	2532	2	2	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0021	2532	2	2	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0022	2532	2	2	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0023	2532	2	2	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0024	2532	2	2	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0025	2532	2	2	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0026	2532	2	2	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0027	2532	1	1	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0028	2532	1	0	0	1	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0029	2532	1	0	0	1	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0030	2532	1	0	0	1	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0031	2532	1	1	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0032	2532	1	1	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0033	2532	1	0	0	1	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0034	2532	1	0	0	0	1	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0035	2532	1	0	0	0	0	1	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0036	2532	1	0	0	1	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269