JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMPRSS7_chr3_112029736_112086269	0/0	c0037	2532	1	0	0	1	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0038	2532	1	0	0	1	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0039	2532	1	1	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0040	2532	1	0	0	1	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0041	2532	1	1	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0042	2532	1	1	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0043	2532	1	1	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0044	2532	1	1	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0045	2532	1	1	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0046	2532	1	0	0	1	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0047	2532	1	1	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0048	2532	1	1	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0049	2532	1	0	0	0	0	1	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0050	2532	1	1	0	0	0	0	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS7_chr3_112029736_112086269	0/0	c0051	2553	1	0	0	0	0	1	copy fasta	TMPRSS7	chr3	112029736	112086269
TMPRSS9_chr19_2355265_2431261	0/0	c0001	3282	26	3	8	8	3	4	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	c0002	3282	25	4	4	7	3	7	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	c0003	3282	7	0	2	4	0	1	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	c0004	3282	7	0	3	0	1	3	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	c0005	3282	6	3	2	0	0	1	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	1/1	c0006	3282	5	0	0	1	1	1	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	c0007	3282	3	0	0	2	0	1	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	c0008	3282	3	0	1	1	0	1	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	c0009	3282	3	0	3	0	0	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	c0010	3282	3	0	0	3	0	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	c0011	3282	2	0	1	1	0	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	c0012	3282	2	0	2	0	0	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	c0013	3282	2	0	0	1	0	1	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	c0014	3282	2	0	0	2	0	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	c0015	3282	1	0	0	0	1	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	c0016	3282	1	1	0	0	0	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	c0017	3282	1	1	0	0	0	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	c0018	3282	1	1	0	0	0	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	c0019	3282	1	0	0	0	0	1	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	c0020	3282	1	0	0	0	0	1	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	c0021	3282	1	1	0	0	0	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	c0022	3282	1	1	0	0	0	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	c0023	3282	1	0	0	1	0	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	c0024	3282	1	1	0	0	0	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	c0025	3282	1	0	0	0	1	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	c0026	3282	1	1	0	0	0	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	c0027	3282	1	1	0	0	0	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	c0028	3282	1	0	0	1	0	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	c0029	3282	1	1	0	0	0	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	c0030	3282	1	1	0	0	0	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	c0031	3282	1	1	0	0	0	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMPRSS9_chr19_2355265_2431261	0/0	c0032	3282	1	1	0	0	0	0	copy fasta	TMPRSS9	chr19	2355265	2431261
TMSB10_chr2_84900656_84911671	1/1	c0001	135	337	88	59	132	15	41	copy fasta	TMSB10	chr2	84900656	84911671
TMSB10_chr2_84900656_84911671	0/0	c0002	135	19	0	15	0	3	1	copy fasta	TMSB10	chr2	84900656	84911671
TMSB15A_chrX_102508682_102521739	1/1	c0001	138	291	78	47	121	13	30	copy fasta	TMSB15A	chrX	102508682	102521739