JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BCL3_chr19_44743708_44765044	0/0	c0007	1365	1	0	0	1	0	0	copy fasta	BCL3	chr19	44743708	44765044
BCL3_chr19_44743708_44765044	0/0	c0008	1365	1	1	0	0	0	0	copy fasta	BCL3	chr19	44743708	44765044
BCL6B_chr17_7018050_7034644	0/0	c0001	1443	215	42	34	98	10	31	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	0/1	c0002	1440	69	19	22	22	1	4	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	0/0	c0003	1440	39	15	1	21	0	2	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	1/0	c0004	1440	11	8	1	0	0	1	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	0/0	c0005	1446	6	4	1	0	0	1	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	0/0	c0006	1449	3	3	0	0	0	0	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	0/0	c0007	1443	2	0	0	2	0	0	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	0/0	c0008	1443	2	0	2	0	0	0	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	0/0	c0009	1440	2	2	0	0	0	0	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	0/0	c0010	1443	1	1	0	0	0	0	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	0/0	c0011	1443	1	0	0	1	0	0	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	0/0	c0012	1443	1	0	0	0	1	0	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	0/0	c0013	1440	1	1	0	0	0	0	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	0/0	c0014	1440	1	1	0	0	0	0	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	0/0	c0015	1440	1	0	1	0	0	0	copy fasta	BCL6B	chr17	7018050	7034644
BCL6B_chr17_7018050_7034644	0/0	c0016	1443	1	0	0	0	0	1	copy fasta	BCL6B	chr17	7018050	7034644
BCL6_chr3_187716381_187750468	0/0	c0001	2121	233	8	51	137	9	28	copy fasta	BCL6	chr3	187716381	187750468
BCL6_chr3_187716381_187750468	1/0	c0002	2121	66	35	13	11	2	4	copy fasta	BCL6	chr3	187716381	187750468
BCL6_chr3_187716381_187750468	0/1	c0003	2121	62	33	3	21	2	2	copy fasta	BCL6	chr3	187716381	187750468
BCL6_chr3_187716381_187750468	0/0	c0004	2121	30	6	5	15	3	1	copy fasta	BCL6	chr3	187716381	187750468
BCL6_chr3_187716381_187750468	0/0	c0005	2121	4	4	0	0	0	0	copy fasta	BCL6	chr3	187716381	187750468
BCL6_chr3_187716381_187750468	0/0	c0006	2121	2	0	2	0	0	0	copy fasta	BCL6	chr3	187716381	187750468
BCL6_chr3_187716381_187750468	0/0	c0007	2121	1	0	1	0	0	0	copy fasta	BCL6	chr3	187716381	187750468
BCL6_chr3_187716381_187750468	0/0	c0008	2121	1	1	0	0	0	0	copy fasta	BCL6	chr3	187716381	187750468
BCL6_chr3_187716381_187750468	0/0	c0009	2121	1	0	0	0	0	1	copy fasta	BCL6	chr3	187716381	187750468
BCL6_chr3_187716381_187750468	0/0	c0010	2121	1	0	0	1	0	0	copy fasta	BCL6	chr3	187716381	187750468
BCL6_chr3_187716381_187750468	0/0	c0011	2121	1	0	0	1	0	0	copy fasta	BCL6	chr3	187716381	187750468
BCL6_chr3_187716381_187750468	0/0	c0012	2121	1	1	0	0	0	0	copy fasta	BCL6	chr3	187716381	187750468
BCL6_chr3_187716381_187750468	0/0	c0013	2121	1	0	1	0	0	0	copy fasta	BCL6	chr3	187716381	187750468
BCL7A_chr12_122016884_122067044	1/0	c0001	633	176	53	27	69	5	21	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/1	c0002	633	162	30	40	65	6	20	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	c0003	633	9	0	2	5	0	2	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	c0004	633	5	0	0	5	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	c0005	633	3	0	1	0	1	1	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	c0006	633	2	0	1	1	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	c0007	633	1	1	0	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	c0008	633	1	0	0	1	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	c0009	633	1	0	0	0	0	1	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	c0010	633	1	0	0	0	0	1	copy fasta	BCL7A	chr12	122016884	122067044
BCL7A_chr12_122016884_122067044	0/0	c0011	633	1	0	1	0	0	0	copy fasta	BCL7A	chr12	122016884	122067044
BCL7B_chr7_73531356_73562690	1/1	c0001	609	284	74	38	124	12	34	copy fasta	BCL7B	chr7	73531356	73562690
BCL7C_chr16_30882795_30899077	1/1	c0001	654	309	93	64	100	14	36	copy fasta	BCL7C	chr16	30882795	30899077
BCL7C_chr16_30882795_30899077	0/0	c0002	654	12	0	0	12	0	0	copy fasta	BCL7C	chr16	30882795	30899077
BCL7C_chr16_30882795_30899077	0/0	c0003	654	2	0	0	0	0	2	copy fasta	BCL7C	chr16	30882795	30899077
BCL7C_chr16_30882795_30899077	0/0	c0004	654	1	1	0	0	0	0	copy fasta	BCL7C	chr16	30882795	30899077
BCL9L_chr11_118891136_118930926	0/1	c0001	4500	85	36	20	15	5	8	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	1/0	c0002	4500	85	23	12	31	3	15	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	c0003	4500	15	2	8	0	0	5	copy fasta	BCL9L	chr11	118891136	118930926