JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMSB15B_chrX_103957627_103970976	0/1	c0001	138	267	69	48	115	11	23	copy fasta	TMSB15B	chrX	103957627	103970976
TMSB15B_chrX_103957627_103970976	0/0	c0002	139	1	0	0	1	0	0	copy fasta	TMSB15B	chrX	103957627	103970976
TMSB15C_chrX_104067887_104081236	0/0	c0001	138	94	19	16	45	4	10	copy fasta	TMSB15C	chrX	104067887	104081236
TMSB4X_chrX_12970110_12982223	1/1	c0001	135	306	72	56	131	13	32	copy fasta	TMSB4X	chrX	12970110	12982223
TMSB4Y_chrY_13698899_13711024	1/1	c0001	135	132	18	20	71	5	16	copy fasta	TMSB4Y	chrY	13698899	13711024
TMT1A_chr12_50920015_50937508	1/1	c0001	735	403	85	73	187	16	40	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	c0002	735	42	7	0	29	0	6	copy fasta	TMT1A	chr12	50920015	50937508
TMT1A_chr12_50920015_50937508	0/0	c0003	735	1	0	1	0	0	0	copy fasta	TMT1A	chr12	50920015	50937508
TMT1B_chr12_55676736_55689611	1/1	c0001	735	415	80	74	203	16	40	copy fasta	TMT1B	chr12	55676736	55689611
TMT1B_chr12_55676736_55689611	0/0	c0002	735	9	2	2	0	2	3	copy fasta	TMT1B	chr12	55676736	55689611
TMT1B_chr12_55676736_55689611	0/0	c0003	735	8	6	2	0	0	0	copy fasta	TMT1B	chr12	55676736	55689611
TMT1B_chr12_55676736_55689611	0/0	c0004	735	7	6	1	0	0	0	copy fasta	TMT1B	chr12	55676736	55689611
TMT1B_chr12_55676736_55689611	0/0	c0005	735	2	1	1	0	0	0	copy fasta	TMT1B	chr12	55676736	55689611
TMT1B_chr12_55676736_55689611	0/0	c0006	735	2	2	0	0	0	0	copy fasta	TMT1B	chr12	55676736	55689611
TMT1B_chr12_55676736_55689611	0/0	c0007	735	2	2	0	0	0	0	copy fasta	TMT1B	chr12	55676736	55689611
TMT1B_chr12_55676736_55689611	0/0	c0008	735	1	0	1	0	0	0	copy fasta	TMT1B	chr12	55676736	55689611
TMT1B_chr12_55676736_55689611	0/0	c0009	735	1	1	0	0	0	0	copy fasta	TMT1B	chr12	55676736	55689611
TMT1B_chr12_55676736_55689611	0/0	c0010	735	1	0	0	1	0	0	copy fasta	TMT1B	chr12	55676736	55689611
TMT1B_chr12_55676736_55689611	0/0	c0011	735	1	0	1	0	0	0	copy fasta	TMT1B	chr12	55676736	55689611
TMT1B_chr12_55676736_55689611	0/0	c0012	735	1	0	0	0	0	1	copy fasta	TMT1B	chr12	55676736	55689611
TMTC1_chr12_29495840_29788942	0/0	c0001	2649	78	9	15	33	9	12	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	c0002	2649	68	10	10	41	1	6	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/1	c0003	2649	25	1	8	10	2	3	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	c0004	2649	23	4	4	13	1	1	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	c0005	2649	15	7	0	8	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	c0006	2649	11	9	0	0	1	1	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	1/0	c0007	2649	11	8	1	0	0	1	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	c0008	2649	9	2	1	3	0	3	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	c0009	2649	6	3	2	1	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	c0010	2649	3	2	1	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	c0011	2649	3	3	0	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	c0012	2649	2	2	0	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	c0013	2649	2	2	0	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	c0014	2649	2	2	0	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	c0015	2649	2	2	0	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	c0016	2649	2	2	0	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	c0017	2649	2	0	0	0	0	2	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	c0018	2649	1	1	0	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	c0019	2649	1	0	1	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	c0020	2649	1	1	0	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	c0021	2649	1	1	0	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	c0022	2649	1	1	0	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	c0023	2649	1	0	0	0	0	1	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	c0024	2649	1	1	0	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	c0025	2649	1	1	0	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	c0026	2649	1	0	0	1	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	c0027	2649	1	1	0	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	c0028	2649	1	0	1	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC1_chr12_29495840_29788942	0/0	c0029	2649	1	1	0	0	0	0	copy fasta	TMTC1	chr12	29495840	29788942
TMTC2_chr12_82681906_83139866	1/1	c0001	2511	80	38	22	4	4	10	copy fasta	TMTC2	chr12	82681906	83139866