JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMTC2_chr12_82681906_83139866	0/0	c0002	2511	9	7	2	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	c0003	2511	3	3	0	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	c0004	2511	1	1	0	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	c0005	2511	1	1	0	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	c0006	2511	1	1	0	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC2_chr12_82681906_83139866	0/0	c0007	2511	1	1	0	0	0	0	copy fasta	TMTC2	chr12	82681906	83139866
TMTC3_chr12_88137307_88204887	1/1	c0001	2745	216	75	38	72	8	21	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	c0002	2745	17	8	0	9	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	c0003	2745	2	2	0	0	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	c0004	2745	2	2	0	0	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	c0005	2745	2	0	0	2	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	c0006	2745	1	0	0	0	0	1	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	c0007	2745	1	1	0	0	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC3_chr12_88137307_88204887	0/0	c0008	2745	1	0	0	1	0	0	copy fasta	TMTC3	chr12	88137307	88204887
TMTC4_chr13_100598625_100679795	0/1	c0001	2283	122	32	10	63	3	13	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	c0002	2283	90	5	23	44	5	13	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	1/0	c0003	2283	49	29	9	1	2	7	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	c0004	2283	47	19	19	2	4	3	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	c0005	2283	10	0	0	8	0	2	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	c0006	2283	6	0	0	4	0	2	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	c0007	2283	3	3	0	0	0	0	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	c0008	2283	3	0	0	3	0	0	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	c0009	2283	2	2	0	0	0	0	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	c0010	2283	2	0	1	0	1	0	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	c0011	2283	1	1	0	0	0	0	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	c0012	2283	1	1	0	0	0	0	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	c0013	2283	1	0	0	1	0	0	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	c0014	2283	1	0	0	1	0	0	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	c0015	2283	1	0	1	0	0	0	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	c0016	2283	1	0	1	0	0	0	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	c0017	2283	1	1	0	0	0	0	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	c0018	2283	1	0	0	0	1	0	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	c0019	2283	1	0	0	1	0	0	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	c0020	2283	1	1	0	0	0	0	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	c0021	2283	1	0	0	1	0	0	copy fasta	TMTC4	chr13	100598625	100679795
TMTC4_chr13_100598625_100679795	0/0	c0022	2283	1	0	0	1	0	0	copy fasta	TMTC4	chr13	100598625	100679795
TMUB1_chr7_151076085_151088493	1/1	c0001	741	401	93	66	183	17	40	copy fasta	TMUB1	chr7	151076085	151088493
TMUB1_chr7_151076085_151088493	0/0	c0002	741	1	1	0	0	0	0	copy fasta	TMUB1	chr7	151076085	151088493
TMUB1_chr7_151076085_151088493	0/0	c0003	741	1	0	0	0	1	0	copy fasta	TMUB1	chr7	151076085	151088493
TMUB1_chr7_151076085_151088493	0/0	c0004	741	1	0	0	1	0	0	copy fasta	TMUB1	chr7	151076085	151088493
TMUB2_chr17_44181972_44196929	1/1	c0001	966	327	70	63	140	14	38	copy fasta	TMUB2	chr17	44181972	44196929
TMUB2_chr17_44181972_44196929	0/0	c0002	966	19	13	1	5	0	0	copy fasta	TMUB2	chr17	44181972	44196929
TMUB2_chr17_44181972_44196929	0/0	c0003	966	9	8	1	0	0	0	copy fasta	TMUB2	chr17	44181972	44196929
TMUB2_chr17_44181972_44196929	0/0	c0004	966	1	0	0	1	0	0	copy fasta	TMUB2	chr17	44181972	44196929
TMUB2_chr17_44181972_44196929	0/0	c0005	966	1	0	0	1	0	0	copy fasta	TMUB2	chr17	44181972	44196929
TMUB2_chr17_44181972_44196929	0/0	c0006	956	1	0	0	1	0	0	copy fasta	TMUB2	chr17	44181972	44196929
TMUB2_chr17_44181972_44196929	0/0	c0007	966	1	1	0	0	0	0	copy fasta	TMUB2	chr17	44181972	44196929
TMUB2_chr17_44181972_44196929	0/0	c0008	966	1	0	1	0	0	0	copy fasta	TMUB2	chr17	44181972	44196929
TMX1_chr14_51235247_51262655	0/1	c0001	843	287	64	54	127	11	30	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	1/0	c0002	843	128	28	19	63	5	12	copy fasta	TMX1	chr14	51235247	51262655