JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TMX1_chr14_51235247_51262655	0/0	c0003	843	8	6	2	0	0	0	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	0/0	c0004	843	1	0	1	0	0	0	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	0/0	c0005	843	1	0	0	1	0	0	copy fasta	TMX1	chr14	51235247	51262655
TMX1_chr14_51235247_51262655	0/0	c0006	843	1	0	0	1	0	0	copy fasta	TMX1	chr14	51235247	51262655
TMX2_chr11_57707593_57745973	0/0	c0001	891	342	85	66	137	14	40	copy fasta	TMX2	chr11	57707593	57745973
TMX2_chr11_57707593_57745973	0/0	c0002	891	1	0	0	1	0	0	copy fasta	TMX2	chr11	57707593	57745973
TMX2_chr11_57707593_57745973	0/0	c0003	891	1	1	0	0	0	0	copy fasta	TMX2	chr11	57707593	57745973
TMX3_chr18_68668688_68720108	1/1	c0001	1365	300	84	52	122	11	29	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	c0002	1365	7	0	0	7	0	0	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	c0003	1365	3	0	0	3	0	0	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	c0004	1365	2	1	1	0	0	0	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	c0005	1365	1	0	0	0	0	1	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	c0006	1365	1	1	0	0	0	0	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	c0007	1365	1	0	0	0	1	0	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	c0008	1365	1	0	1	0	0	0	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	c0009	1355	1	0	0	1	0	0	copy fasta	TMX3	chr18	68668688	68720108
TMX3_chr18_68668688_68720108	0/0	c0010	1365	1	0	0	1	0	0	copy fasta	TMX3	chr18	68668688	68720108
TMX4_chr20_7972346_8024761	0/0	c0001	1050	152	55	15	76	0	6	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/1	c0002	1050	108	24	18	53	1	11	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	1/0	c0003	1050	56	7	20	9	4	15	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	c0004	1050	25	1	8	9	1	6	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	c0005	1050	2	0	0	2	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	c0006	1050	1	1	0	0	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	c0007	1050	1	0	0	1	0	0	copy fasta	TMX4	chr20	7972346	8024761
TMX4_chr20_7972346_8024761	0/0	c0008	1050	1	0	1	0	0	0	copy fasta	TMX4	chr20	7972346	8024761
TNC_chr9_115014575_115123157	0/0	c0001	6606	39	1	10	21	1	6	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0002	6606	26	3	7	9	4	3	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0003	6606	23	2	3	16	1	1	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0004	6606	19	0	3	11	0	5	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0005	6606	15	0	5	1	5	4	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0006	6606	14	0	0	14	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0007	6606	13	3	6	4	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0008	6606	12	0	0	11	0	1	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0009	6606	12	3	2	4	0	3	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0010	6606	10	6	0	3	0	1	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0011	6606	7	0	1	5	0	1	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0012	6606	7	7	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0013	6606	6	0	1	4	0	1	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0014	6606	6	0	5	1	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0015	6606	5	0	2	3	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0016	6606	5	2	3	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0017	6606	5	0	1	1	0	3	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0018	6606	5	3	0	1	0	1	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0019	6606	5	0	4	0	0	1	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0020	6606	5	0	0	5	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0021	6606	4	4	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0022	6606	4	4	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0023	6606	4	0	1	0	2	1	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0024	6606	4	1	0	3	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0025	6606	3	2	1	0	0	0	copy fasta	TNC	chr9	115014575	115123157