JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TNC_chr9_115014575_115123157	0/0	c0076	6606	1	0	0	1	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0077	6606	1	1	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0078	6606	1	1	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0079	6606	1	1	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0080	6606	1	0	0	1	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	1/0	c0081	6606	1	0	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0082	6606	1	1	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0083	6606	1	0	1	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0084	6606	1	0	0	1	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0085	6606	1	0	0	1	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0086	6606	1	0	0	1	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0087	6606	1	1	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0088	6606	1	0	0	0	0	1	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0089	6606	1	0	0	1	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0090	6606	1	0	1	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0091	6606	1	1	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0092	6606	1	1	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0093	6606	1	1	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0094	6606	1	0	0	0	0	1	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0095	6606	1	1	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0096	6606	1	0	0	0	0	1	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0097	6606	1	0	0	0	0	1	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0098	6606	1	0	0	0	0	1	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0099	6606	1	0	0	1	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0100	6606	1	1	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0101	6606	1	0	0	1	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0102	6606	1	0	0	1	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0103	6606	1	1	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNC_chr9_115014575_115123157	0/0	c0104	6606	1	1	0	0	0	0	copy fasta	TNC	chr9	115014575	115123157
TNFAIP1_chr17_28330761_28352009	1/1	c0001	951	337	89	66	123	12	45	copy fasta	TNFAIP1	chr17	28330761	28352009
TNFAIP1_chr17_28330761_28352009	0/0	c0002	951	1	0	0	0	0	1	copy fasta	TNFAIP1	chr17	28330761	28352009
TNFAIP1_chr17_28330761_28352009	0/0	c0003	951	1	1	0	0	0	0	copy fasta	TNFAIP1	chr17	28330761	28352009
TNFAIP1_chr17_28330761_28352009	0/0	c0004	951	1	0	0	1	0	0	copy fasta	TNFAIP1	chr17	28330761	28352009
TNFAIP2_chr14_103118461_103142439	0/0	c0001	1965	200	37	39	84	12	28	copy fasta	TNFAIP2	chr14	103118461	103142439
TNFAIP2_chr14_103118461_103142439	1/1	c0002	1965	175	40	27	85	6	15	copy fasta	TNFAIP2	chr14	103118461	103142439
TNFAIP2_chr14_103118461_103142439	0/0	c0003	1968	5	3	2	0	0	0	copy fasta	TNFAIP2	chr14	103118461	103142439
TNFAIP2_chr14_103118461_103142439	0/0	c0004	1965	3	0	0	3	0	0	copy fasta	TNFAIP2	chr14	103118461	103142439
TNFAIP2_chr14_103118461_103142439	0/0	c0005	1965	3	3	0	0	0	0	copy fasta	TNFAIP2	chr14	103118461	103142439
TNFAIP2_chr14_103118461_103142439	0/0	c0006	1965	2	2	0	0	0	0	copy fasta	TNFAIP2	chr14	103118461	103142439
TNFAIP2_chr14_103118461_103142439	0/0	c0007	1965	2	0	2	0	0	0	copy fasta	TNFAIP2	chr14	103118461	103142439
TNFAIP2_chr14_103118461_103142439	0/0	c0008	1965	2	1	1	0	0	0	copy fasta	TNFAIP2	chr14	103118461	103142439
TNFAIP2_chr14_103118461_103142439	0/0	c0009	1965	1	1	0	0	0	0	copy fasta	TNFAIP2	chr14	103118461	103142439
TNFAIP2_chr14_103118461_103142439	0/0	c0010	1965	1	0	0	1	0	0	copy fasta	TNFAIP2	chr14	103118461	103142439
TNFAIP2_chr14_103118461_103142439	0/0	c0011	1968	1	0	1	0	0	0	copy fasta	TNFAIP2	chr14	103118461	103142439
TNFAIP2_chr14_103118461_103142439	0/0	c0012	1965	1	0	0	0	0	1	copy fasta	TNFAIP2	chr14	103118461	103142439
TNFAIP2_chr14_103118461_103142439	0/0	c0013	1965	1	1	0	0	0	0	copy fasta	TNFAIP2	chr14	103118461	103142439
TNFAIP2_chr14_103118461_103142439	0/0	c0014	1965	1	0	0	1	0	0	copy fasta	TNFAIP2	chr14	103118461	103142439
TNFAIP2_chr14_103118461_103142439	0/0	c0015	1965	1	0	0	1	0	0	copy fasta	TNFAIP2	chr14	103118461	103142439
TNFAIP2_chr14_103118461_103142439	0/0	c0016	1965	1	1	0	0	0	0	copy fasta	TNFAIP2	chr14	103118461	103142439
TNFAIP2_chr14_103118461_103142439	0/0	c0017	1965	1	1	0	0	0	0	copy fasta	TNFAIP2	chr14	103118461	103142439