JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TNFAIP2_chr14_103118461_103142439	0/0	c0018	1965	1	0	0	1	0	0	copy fasta	TNFAIP2	chr14	103118461	103142439
TNFAIP3_chr6_137862259_137888312	1/1	c0001	2373	278	54	56	121	11	34	copy fasta	TNFAIP3	chr6	137862259	137888312
TNFAIP3_chr6_137862259_137888312	0/0	c0002	2373	52	24	4	21	3	0	copy fasta	TNFAIP3	chr6	137862259	137888312
TNFAIP3_chr6_137862259_137888312	0/0	c0003	2373	11	10	1	0	0	0	copy fasta	TNFAIP3	chr6	137862259	137888312
TNFAIP3_chr6_137862259_137888312	0/0	c0004	2373	9	0	4	1	0	4	copy fasta	TNFAIP3	chr6	137862259	137888312
TNFAIP3_chr6_137862259_137888312	0/0	c0005	2373	4	4	0	0	0	0	copy fasta	TNFAIP3	chr6	137862259	137888312
TNFAIP3_chr6_137862259_137888312	0/0	c0006	2373	1	0	0	1	0	0	copy fasta	TNFAIP3	chr6	137862259	137888312
TNFAIP3_chr6_137862259_137888312	0/0	c0007	2373	1	0	1	0	0	0	copy fasta	TNFAIP3	chr6	137862259	137888312
TNFAIP3_chr6_137862259_137888312	0/0	c0008	2373	1	1	0	0	0	0	copy fasta	TNFAIP3	chr6	137862259	137888312
TNFAIP3_chr6_137862259_137888312	0/0	c0009	2373	1	1	0	0	0	0	copy fasta	TNFAIP3	chr6	137862259	137888312
TNFAIP3_chr6_137862259_137888312	0/0	c0010	2373	1	0	0	1	0	0	copy fasta	TNFAIP3	chr6	137862259	137888312
TNFAIP3_chr6_137862259_137888312	0/0	c0011	2373	1	0	0	1	0	0	copy fasta	TNFAIP3	chr6	137862259	137888312
TNFAIP6_chr2_151352592_151385046	1/0	c0001	834	200	47	44	79	9	20	copy fasta	TNFAIP6	chr2	151352592	151385046
TNFAIP6_chr2_151352592_151385046	0/0	c0002	833	129	4	18	84	7	16	copy fasta	TNFAIP6	chr2	151352592	151385046
TNFAIP6_chr2_151352592_151385046	0/1	c0003	833	32	20	4	0	1	6	copy fasta	TNFAIP6	chr2	151352592	151385046
TNFAIP6_chr2_151352592_151385046	0/0	c0004	834	26	7	1	15	0	3	copy fasta	TNFAIP6	chr2	151352592	151385046
TNFAIP6_chr2_151352592_151385046	0/0	c0005	833	16	0	0	15	1	0	copy fasta	TNFAIP6	chr2	151352592	151385046
TNFAIP6_chr2_151352592_151385046	0/0	c0006	833	4	3	1	0	0	0	copy fasta	TNFAIP6	chr2	151352592	151385046
TNFAIP6_chr2_151352592_151385046	0/0	c0007	834	2	2	0	0	0	0	copy fasta	TNFAIP6	chr2	151352592	151385046
TNFAIP6_chr2_151352592_151385046	0/0	c0008	834	2	0	0	2	0	0	copy fasta	TNFAIP6	chr2	151352592	151385046
TNFAIP6_chr2_151352592_151385046	0/0	c0009	833	2	1	0	0	0	1	copy fasta	TNFAIP6	chr2	151352592	151385046
TNFAIP6_chr2_151352592_151385046	0/0	c0010	834	1	1	0	0	0	0	copy fasta	TNFAIP6	chr2	151352592	151385046
TNFAIP6_chr2_151352592_151385046	0/0	c0011	833	1	1	0	0	0	0	copy fasta	TNFAIP6	chr2	151352592	151385046
TNFAIP6_chr2_151352592_151385046	0/0	c0012	833	1	0	0	1	0	0	copy fasta	TNFAIP6	chr2	151352592	151385046
TNFAIP8L1_chr19_4634516_4660568	1/1	c0001	561	408	96	78	181	16	35	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	c0002	561	2	0	0	0	0	2	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	c0003	561	1	0	0	0	0	1	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	c0004	561	1	1	0	0	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	c0005	561	1	0	0	1	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	c0006	561	1	0	0	1	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	c0007	561	1	1	0	0	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L1_chr19_4634516_4660568	0/0	c0008	561	1	0	0	1	0	0	copy fasta	TNFAIP8L1	chr19	4634516	4660568
TNFAIP8L2_chr1_151151649_151164749	1/1	c0001	555	326	83	64	128	17	32	copy fasta	TNFAIP8L2	chr1	151151649	151164749
TNFAIP8L2_chr1_151151649_151164749	0/0	c0002	555	13	13	0	0	0	0	copy fasta	TNFAIP8L2	chr1	151151649	151164749
TNFAIP8L2_chr1_151151649_151164749	0/0	c0003	555	3	0	0	0	1	2	copy fasta	TNFAIP8L2	chr1	151151649	151164749
TNFAIP8L2_chr1_151151649_151164749	0/0	c0004	555	2	0	0	0	0	2	copy fasta	TNFAIP8L2	chr1	151151649	151164749
TNFAIP8L2_chr1_151151649_151164749	0/0	c0005	555	1	0	0	1	0	0	copy fasta	TNFAIP8L2	chr1	151151649	151164749
TNFAIP8L2_chr1_151151649_151164749	0/0	c0006	555	1	0	0	1	0	0	copy fasta	TNFAIP8L2	chr1	151151649	151164749
TNFAIP8L2_chr1_151151649_151164749	0/0	c0007	555	1	0	0	1	0	0	copy fasta	TNFAIP8L2	chr1	151151649	151164749
TNFAIP8L2_chr1_151151649_151164749	0/0	c0008	555	1	0	0	1	0	0	copy fasta	TNFAIP8L2	chr1	151151649	151164749
TNFAIP8L3_chr15_51051601_51099906	1/1	c0001	615	385	87	64	176	14	42	copy fasta	TNFAIP8L3	chr15	51051601	51099906
TNFAIP8L3_chr15_51051601_51099906	0/0	c0002	615	6	0	6	0	0	0	copy fasta	TNFAIP8L3	chr15	51051601	51099906
TNFAIP8L3_chr15_51051601_51099906	0/0	c0003	615	1	0	1	0	0	0	copy fasta	TNFAIP8L3	chr15	51051601	51099906
TNFAIP8L3_chr15_51051601_51099906	0/0	c0004	615	1	0	1	0	0	0	copy fasta	TNFAIP8L3	chr15	51051601	51099906
TNFAIP8L3_chr15_51051601_51099906	0/0	c0005	615	1	1	0	0	0	0	copy fasta	TNFAIP8L3	chr15	51051601	51099906
TNFAIP8_chr5_119351019_119404688	1/1	c0001	597	279	46	53	140	10	28	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	c0002	597	103	46	23	24	2	8	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFAIP8_chr5_119351019_119404688	0/0	c0003	597	2	0	0	2	0	0	copy fasta	TNFAIP8	chr5	119351019	119404688
TNFRSF10A_chr8_23185452_23230102	0/0	c0001	1407	199	7	29	129	9	25	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/1	c0002	1407	62	32	18	0	3	8	copy fasta	TNFRSF10A	chr8	23185452	23230102