JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TNFRSF10A_chr8_23185452_23230102	0/0	c0003	1407	21	19	2	0	0	0	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	c0004	1407	16	11	3	2	0	0	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	c0005	1407	15	0	7	2	3	3	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	c0006	1407	9	9	0	0	0	0	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	c0007	1407	7	0	6	0	0	1	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	1/0	c0008	1407	5	3	0	0	1	0	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	c0009	1407	4	3	0	0	0	1	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	c0010	1407	3	3	0	0	0	0	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	c0011	1407	3	3	0	0	0	0	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	c0012	1407	3	3	0	0	0	0	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	c0013	1407	2	0	1	0	0	1	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	c0014	1407	1	0	0	1	0	0	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	c0015	1407	1	0	1	0	0	0	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	c0016	1407	1	0	1	0	0	0	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	c0017	1407	1	1	0	0	0	0	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	c0018	1407	1	0	0	1	0	0	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	c0019	1407	1	0	0	0	0	1	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	c0020	1407	1	1	0	0	0	0	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	c0021	1407	1	1	0	0	0	0	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10A_chr8_23185452_23230102	0/0	c0022	1407	1	0	0	1	0	0	copy fasta	TNFRSF10A	chr8	23185452	23230102
TNFRSF10B_chr8_23015133_23074031	0/1	c0001	1323	213	39	28	111	6	28	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	c0002	1323	56	16	16	13	7	4	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	c0003	1323	49	0	3	39	0	7	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	c0004	1323	36	20	9	4	1	2	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	1/0	c0005	1323	7	5	0	0	0	1	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	c0006	1323	6	5	1	0	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	c0007	1323	3	3	0	0	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	c0008	1323	3	0	1	2	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	c0009	1323	2	0	2	0	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	c0010	1323	1	1	0	0	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	c0011	1323	1	1	0	0	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	c0012	1323	1	0	0	0	0	1	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	c0013	1323	1	0	0	1	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	c0014	1323	1	0	1	0	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	c0015	1323	1	0	0	0	0	1	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	c0016	1323	1	0	0	1	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	c0017	1323	1	0	1	0	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10B_chr8_23015133_23074031	0/0	c0018	1323	1	0	0	1	0	0	copy fasta	TNFRSF10B	chr8	23015133	23074031
TNFRSF10C_chr8_23097921_23122445	0/1	c0001	780	217	29	56	96	12	23	copy fasta	TNFRSF10C	chr8	23097921	23122445
TNFRSF10C_chr8_23097921_23122445	1/0	c0002	780	92	24	11	48	1	7	copy fasta	TNFRSF10C	chr8	23097921	23122445
TNFRSF10C_chr8_23097921_23122445	0/0	c0003	780	77	2	3	61	1	10	copy fasta	TNFRSF10C	chr8	23097921	23122445
TNFRSF10C_chr8_23097921_23122445	0/0	c0004	825	48	30	1	11	1	5	copy fasta	TNFRSF10C	chr8	23097921	23122445
TNFRSF10C_chr8_23097921_23122445	0/0	c0005	825	5	5	0	0	0	0	copy fasta	TNFRSF10C	chr8	23097921	23122445
TNFRSF10C_chr8_23097921_23122445	0/0	c0006	780	4	4	0	0	0	0	copy fasta	TNFRSF10C	chr8	23097921	23122445
TNFRSF10C_chr8_23097921_23122445	0/0	c0007	780	3	2	1	0	0	0	copy fasta	TNFRSF10C	chr8	23097921	23122445
TNFRSF10C_chr8_23097921_23122445	0/0	c0008	780	1	1	0	0	0	0	copy fasta	TNFRSF10C	chr8	23097921	23122445
TNFRSF10C_chr8_23097921_23122445	0/0	c0009	825	1	1	0	0	0	0	copy fasta	TNFRSF10C	chr8	23097921	23122445
TNFRSF10C_chr8_23097921_23122445	0/0	c0010	825	1	0	0	0	0	1	copy fasta	TNFRSF10C	chr8	23097921	23122445
TNFRSF10C_chr8_23097921_23122445	0/0	c0011	780	1	0	0	1	0	0	copy fasta	TNFRSF10C	chr8	23097921	23122445
TNFRSF10C_chr8_23097921_23122445	0/0	c0012	780	1	1	0	0	0	0	copy fasta	TNFRSF10C	chr8	23097921	23122445