JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TNFRSF10C_chr8_23097921_23122445	0/0	c0013	780	1	0	0	0	1	0	copy fasta	TNFRSF10C	chr8	23097921	23122445
TNFRSF10C_chr8_23097921_23122445	0/0	c0014	780	1	1	0	0	0	0	copy fasta	TNFRSF10C	chr8	23097921	23122445
TNFRSF10C_chr8_23097921_23122445	0/0	c0015	780	1	0	0	1	0	0	copy fasta	TNFRSF10C	chr8	23097921	23122445
TNFRSF10D_chr8_23130588_23169027	0/1	c0001	1161	191	27	37	84	9	33	copy fasta	TNFRSF10D	chr8	23130588	23169027
TNFRSF10D_chr8_23130588_23169027	0/0	c0002	1161	128	3	23	98	1	3	copy fasta	TNFRSF10D	chr8	23130588	23169027
TNFRSF10D_chr8_23130588_23169027	1/0	c0003	1161	62	35	15	2	4	5	copy fasta	TNFRSF10D	chr8	23130588	23169027
TNFRSF10D_chr8_23130588_23169027	0/0	c0004	1161	30	18	4	7	0	1	copy fasta	TNFRSF10D	chr8	23130588	23169027
TNFRSF10D_chr8_23130588_23169027	0/0	c0005	1161	6	0	3	0	1	2	copy fasta	TNFRSF10D	chr8	23130588	23169027
TNFRSF10D_chr8_23130588_23169027	0/0	c0006	1161	4	4	0	0	0	0	copy fasta	TNFRSF10D	chr8	23130588	23169027
TNFRSF10D_chr8_23130588_23169027	0/0	c0007	1161	2	1	1	0	0	0	copy fasta	TNFRSF10D	chr8	23130588	23169027
TNFRSF10D_chr8_23130588_23169027	0/0	c0008	1161	2	1	1	0	0	0	copy fasta	TNFRSF10D	chr8	23130588	23169027
TNFRSF10D_chr8_23130588_23169027	0/0	c0009	1161	2	2	0	0	0	0	copy fasta	TNFRSF10D	chr8	23130588	23169027
TNFRSF10D_chr8_23130588_23169027	0/0	c0010	1161	2	2	0	0	0	0	copy fasta	TNFRSF10D	chr8	23130588	23169027
TNFRSF10D_chr8_23130588_23169027	0/0	c0011	1161	2	0	0	2	0	0	copy fasta	TNFRSF10D	chr8	23130588	23169027
TNFRSF10D_chr8_23130588_23169027	0/0	c0012	1047	2	1	0	0	0	1	copy fasta	TNFRSF10D	chr8	23130588	23169027
TNFRSF10D_chr8_23130588_23169027	0/0	c0013	1161	2	0	0	2	0	0	copy fasta	TNFRSF10D	chr8	23130588	23169027
TNFRSF10D_chr8_23130588_23169027	0/0	c0014	1161	1	0	0	0	1	0	copy fasta	TNFRSF10D	chr8	23130588	23169027
TNFRSF10D_chr8_23130588_23169027	0/0	c0015	1161	1	1	0	0	0	0	copy fasta	TNFRSF10D	chr8	23130588	23169027
TNFRSF10D_chr8_23130588_23169027	0/0	c0016	32950	1	1	0	0	0	0	copy fasta	TNFRSF10D	chr8	23130588	23169027
TNFRSF10D_chr8_23130588_23169027	0/0	c0017	32950	1	1	0	0	0	0	copy fasta	TNFRSF10D	chr8	23130588	23169027
TNFRSF10D_chr8_23130588_23169027	0/0	c0018	32951	1	1	0	0	0	0	copy fasta	TNFRSF10D	chr8	23130588	23169027
TNFRSF10D_chr8_23130588_23169027	0/0	c0019	32951	1	1	0	0	0	0	copy fasta	TNFRSF10D	chr8	23130588	23169027
TNFRSF10D_chr8_23130588_23169027	0/0	c0020	1161	1	0	0	1	0	0	copy fasta	TNFRSF10D	chr8	23130588	23169027
TNFRSF10D_chr8_23130588_23169027	0/0	c0021	1161	1	0	0	0	0	1	copy fasta	TNFRSF10D	chr8	23130588	23169027
TNFRSF10D_chr8_23130588_23169027	0/0	c0022	1161	1	1	0	0	0	0	copy fasta	TNFRSF10D	chr8	23130588	23169027
TNFRSF11A_chr18_62320310_62396288	0/0	c0001	1851	204	47	27	104	9	17	copy fasta	TNFRSF11A	chr18	62320310	62396288
TNFRSF11A_chr18_62320310_62396288	0/0	c0002	1851	128	27	23	56	4	18	copy fasta	TNFRSF11A	chr18	62320310	62396288
TNFRSF11A_chr18_62320310_62396288	0/0	c0003	1851	17	1	10	6	0	0	copy fasta	TNFRSF11A	chr18	62320310	62396288
TNFRSF11A_chr18_62320310_62396288	0/1	c0004	1851	11	0	8	0	1	1	copy fasta	TNFRSF11A	chr18	62320310	62396288
TNFRSF11A_chr18_62320310_62396288	1/0	c0005	1851	6	0	0	0	2	3	copy fasta	TNFRSF11A	chr18	62320310	62396288
TNFRSF11A_chr18_62320310_62396288	0/0	c0006	1851	5	4	1	0	0	0	copy fasta	TNFRSF11A	chr18	62320310	62396288
TNFRSF11A_chr18_62320310_62396288	0/0	c0007	1851	3	0	0	3	0	0	copy fasta	TNFRSF11A	chr18	62320310	62396288
TNFRSF11A_chr18_62320310_62396288	0/0	c0008	1851	2	0	2	0	0	0	copy fasta	TNFRSF11A	chr18	62320310	62396288
TNFRSF11A_chr18_62320310_62396288	0/0	c0009	1851	2	1	1	0	0	0	copy fasta	TNFRSF11A	chr18	62320310	62396288
TNFRSF11A_chr18_62320310_62396288	0/0	c0010	1851	1	0	0	0	0	1	copy fasta	TNFRSF11A	chr18	62320310	62396288
TNFRSF11A_chr18_62320310_62396288	0/0	c0011	1851	1	0	0	1	0	0	copy fasta	TNFRSF11A	chr18	62320310	62396288
TNFRSF11A_chr18_62320310_62396288	0/0	c0012	1851	1	1	0	0	0	0	copy fasta	TNFRSF11A	chr18	62320310	62396288
TNFRSF11A_chr18_62320310_62396288	0/0	c0013	1851	1	1	0	0	0	0	copy fasta	TNFRSF11A	chr18	62320310	62396288
TNFRSF11A_chr18_62320310_62396288	0/0	c0014	1851	1	0	1	0	0	0	copy fasta	TNFRSF11A	chr18	62320310	62396288
TNFRSF11A_chr18_62320310_62396288	0/0	c0015	1851	1	0	1	0	0	0	copy fasta	TNFRSF11A	chr18	62320310	62396288
TNFRSF11A_chr18_62320310_62396288	0/0	c0016	1851	1	1	0	0	0	0	copy fasta	TNFRSF11A	chr18	62320310	62396288
TNFRSF11A_chr18_62320310_62396288	0/0	c0017	1851	1	1	0	0	0	0	copy fasta	TNFRSF11A	chr18	62320310	62396288
TNFRSF11A_chr18_62320310_62396288	0/0	c0018	1851	1	1	0	0	0	0	copy fasta	TNFRSF11A	chr18	62320310	62396288
TNFRSF11A_chr18_62320310_62396288	0/0	c0019	1851	1	1	0	0	0	0	copy fasta	TNFRSF11A	chr18	62320310	62396288
TNFRSF11A_chr18_62320310_62396288	0/0	c0020	1851	1	0	0	0	0	1	copy fasta	TNFRSF11A	chr18	62320310	62396288
TNFRSF11A_chr18_62320310_62396288	0/0	c0021	1851	1	0	0	0	0	1	copy fasta	TNFRSF11A	chr18	62320310	62396288
TNFRSF11A_chr18_62320310_62396288	0/0	c0022	1851	1	0	0	1	0	0	copy fasta	TNFRSF11A	chr18	62320310	62396288
TNFRSF11A_chr18_62320310_62396288	0/0	c0023	1851	1	0	0	1	0	0	copy fasta	TNFRSF11A	chr18	62320310	62396288
TNFRSF11B_chr8_118918557_118956885	0/0	c0001	1206	270	43	27	170	4	26	copy fasta	TNFRSF11B	chr8	118918557	118956885
TNFRSF11B_chr8_118918557_118956885	1/1	c0002	1206	92	1	26	44	3	16	copy fasta	TNFRSF11B	chr8	118918557	118956885