JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TNFRSF11B_chr8_118918557_118956885	0/0	c0003	1206	34	33	1	0	0	0	copy fasta	TNFRSF11B	chr8	118918557	118956885
TNFRSF11B_chr8_118918557_118956885	0/0	c0004	1206	15	4	5	0	1	5	copy fasta	TNFRSF11B	chr8	118918557	118956885
TNFRSF11B_chr8_118918557_118956885	0/0	c0005	1206	10	9	1	0	0	0	copy fasta	TNFRSF11B	chr8	118918557	118956885
TNFRSF11B_chr8_118918557_118956885	0/0	c0006	1206	2	0	2	0	0	0	copy fasta	TNFRSF11B	chr8	118918557	118956885
TNFRSF11B_chr8_118918557_118956885	0/0	c0007	1206	2	2	0	0	0	0	copy fasta	TNFRSF11B	chr8	118918557	118956885
TNFRSF11B_chr8_118918557_118956885	0/0	c0008	1206	1	0	0	0	0	1	copy fasta	TNFRSF11B	chr8	118918557	118956885
TNFRSF11B_chr8_118918557_118956885	0/0	c0009	1206	1	1	0	0	0	0	copy fasta	TNFRSF11B	chr8	118918557	118956885
TNFRSF11B_chr8_118918557_118956885	0/0	c0010	1206	1	1	0	0	0	0	copy fasta	TNFRSF11B	chr8	118918557	118956885
TNFRSF12A_chr16_3015368_3027383	1/1	c0001	390	405	94	77	170	18	44	copy fasta	TNFRSF12A	chr16	3015368	3027383
TNFRSF12A_chr16_3015368_3027383	0/0	c0002	390	4	4	0	0	0	0	copy fasta	TNFRSF12A	chr16	3015368	3027383
TNFRSF12A_chr16_3015368_3027383	0/0	c0003	390	2	0	0	2	0	0	copy fasta	TNFRSF12A	chr16	3015368	3027383
TNFRSF12A_chr16_3015368_3027383	0/0	c0004	390	1	0	1	0	0	0	copy fasta	TNFRSF12A	chr16	3015368	3027383
TNFRSF12A_chr16_3015368_3027383	0/0	c0005	390	1	0	0	1	0	0	copy fasta	TNFRSF12A	chr16	3015368	3027383
TNFRSF12A_chr16_3015368_3027383	0/0	c0006	390	1	0	0	1	0	0	copy fasta	TNFRSF12A	chr16	3015368	3027383
TNFRSF13B_chr17_16934081_16977118	0/0	c0001	882	163	33	22	88	3	17	copy fasta	TNFRSF13B	chr17	16934081	16977118
TNFRSF13B_chr17_16934081_16977118	0/0	c0002	882	99	35	22	30	6	6	copy fasta	TNFRSF13B	chr17	16934081	16977118
TNFRSF13B_chr17_16934081_16977118	0/0	c0003	882	97	15	10	58	1	13	copy fasta	TNFRSF13B	chr17	16934081	16977118
TNFRSF13B_chr17_16934081_16977118	0/0	c0004	882	21	1	10	0	3	7	copy fasta	TNFRSF13B	chr17	16934081	16977118
TNFRSF13B_chr17_16934081_16977118	0/0	c0005	882	7	2	2	2	0	1	copy fasta	TNFRSF13B	chr17	16934081	16977118
TNFRSF13B_chr17_16934081_16977118	1/1	c0006	882	3	0	1	0	0	0	copy fasta	TNFRSF13B	chr17	16934081	16977118
TNFRSF13B_chr17_16934081_16977118	0/0	c0007	882	2	0	1	1	0	0	copy fasta	TNFRSF13B	chr17	16934081	16977118
TNFRSF13B_chr17_16934081_16977118	0/0	c0008	882	2	2	0	0	0	0	copy fasta	TNFRSF13B	chr17	16934081	16977118
TNFRSF13B_chr17_16934081_16977118	0/0	c0009	882	2	1	1	0	0	0	copy fasta	TNFRSF13B	chr17	16934081	16977118
TNFRSF13B_chr17_16934081_16977118	0/0	c0010	882	1	0	0	1	0	0	copy fasta	TNFRSF13B	chr17	16934081	16977118
TNFRSF13B_chr17_16934081_16977118	0/0	c0011	882	1	0	1	0	0	0	copy fasta	TNFRSF13B	chr17	16934081	16977118
TNFRSF13B_chr17_16934081_16977118	0/0	c0012	882	1	0	1	0	0	0	copy fasta	TNFRSF13B	chr17	16934081	16977118
TNFRSF13B_chr17_16934081_16977118	0/0	c0013	636	1	0	0	1	0	0	copy fasta	TNFRSF13B	chr17	16934081	16977118
TNFRSF13B_chr17_16934081_16977118	0/0	c0014	882	1	1	0	0	0	0	copy fasta	TNFRSF13B	chr17	16934081	16977118
TNFRSF13B_chr17_16934081_16977118	0/0	c0015	882	1	0	0	1	0	0	copy fasta	TNFRSF13B	chr17	16934081	16977118
TNFRSF13B_chr17_16934081_16977118	0/0	c0016	882	1	0	0	0	1	0	copy fasta	TNFRSF13B	chr17	16934081	16977118
TNFRSF13B_chr17_16934081_16977118	0/0	c0017	882	1	0	1	0	0	0	copy fasta	TNFRSF13B	chr17	16934081	16977118
TNFRSF13C_chr22_41917032_41931806	1/0	c0001	555	283	79	60	94	10	39	copy fasta	TNFRSF13C	chr22	41917032	41931806
TNFRSF13C_chr22_41917032_41931806	0/0	c0002	555	17	0	4	8	2	3	copy fasta	TNFRSF13C	chr22	41917032	41931806
TNFRSF13C_chr22_41917032_41931806	0/0	c0003	555	4	3	1	0	0	0	copy fasta	TNFRSF13C	chr22	41917032	41931806
TNFRSF13C_chr22_41917032_41931806	0/0	c0004	555	3	2	1	0	0	0	copy fasta	TNFRSF13C	chr22	41917032	41931806
TNFRSF13C_chr22_41917032_41931806	0/0	c0005	555	2	2	0	0	0	0	copy fasta	TNFRSF13C	chr22	41917032	41931806
TNFRSF13C_chr22_41917032_41931806	0/1	c0006	555	2	0	1	0	0	0	copy fasta	TNFRSF13C	chr22	41917032	41931806
TNFRSF13C_chr22_41917032_41931806	0/0	c0007	555	1	0	0	1	0	0	copy fasta	TNFRSF13C	chr22	41917032	41931806
TNFRSF13C_chr22_41917032_41931806	0/0	c0008	555	1	0	0	1	0	0	copy fasta	TNFRSF13C	chr22	41917032	41931806
TNFRSF13C_chr22_41917032_41931806	0/0	c0009	555	1	0	1	0	0	0	copy fasta	TNFRSF13C	chr22	41917032	41931806
TNFRSF14_chr1_2551371_2568829	0/0	c0001	852	176	58	37	60	2	19	copy fasta	TNFRSF14	chr1	2551371	2568829
TNFRSF14_chr1_2551371_2568829	0/1	c0002	852	160	12	29	88	9	21	copy fasta	TNFRSF14	chr1	2551371	2568829
TNFRSF14_chr1_2551371_2568829	0/0	c0003	852	33	10	6	10	1	6	copy fasta	TNFRSF14	chr1	2551371	2568829
TNFRSF14_chr1_2551371_2568829	0/0	c0004	852	8	5	0	3	0	0	copy fasta	TNFRSF14	chr1	2551371	2568829
TNFRSF14_chr1_2551371_2568829	0/0	c0005	852	5	5	0	0	0	0	copy fasta	TNFRSF14	chr1	2551371	2568829
TNFRSF14_chr1_2551371_2568829	0/0	c0006	852	5	2	2	1	0	0	copy fasta	TNFRSF14	chr1	2551371	2568829
TNFRSF14_chr1_2551371_2568829	0/0	c0007	852	2	0	2	0	0	0	copy fasta	TNFRSF14	chr1	2551371	2568829
TNFRSF14_chr1_2551371_2568829	0/0	c0008	852	2	0	0	2	0	0	copy fasta	TNFRSF14	chr1	2551371	2568829
TNFRSF14_chr1_2551371_2568829	0/0	c0009	852	1	1	0	0	0	0	copy fasta	TNFRSF14	chr1	2551371	2568829
TNFRSF14_chr1_2551371_2568829	0/0	c0010	852	1	0	0	1	0	0	copy fasta	TNFRSF14	chr1	2551371	2568829