JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TNFRSF14_chr1_2551371_2568829	0/0	c0011	852	1	0	0	1	0	0	copy fasta	TNFRSF14	chr1	2551371	2568829
TNFRSF14_chr1_2551371_2568829	0/0	c0012	852	1	1	0	0	0	0	copy fasta	TNFRSF14	chr1	2551371	2568829
TNFRSF17_chr16_11960210_11973068	0/1	c0001	555	302	53	63	132	15	38	copy fasta	TNFRSF17	chr16	11960210	11973068
TNFRSF17_chr16_11960210_11973068	0/0	c0002	555	51	20	5	25	1	0	copy fasta	TNFRSF17	chr16	11960210	11973068
TNFRSF17_chr16_11960210_11973068	0/0	c0003	555	38	5	14	18	0	1	copy fasta	TNFRSF17	chr16	11960210	11973068
TNFRSF17_chr16_11960210_11973068	1/0	c0004	555	18	11	1	0	0	5	copy fasta	TNFRSF17	chr16	11960210	11973068
TNFRSF17_chr16_11960210_11973068	0/0	c0005	555	2	2	0	0	0	0	copy fasta	TNFRSF17	chr16	11960210	11973068
TNFRSF17_chr16_11960210_11973068	0/0	c0006	555	1	0	0	1	0	0	copy fasta	TNFRSF17	chr16	11960210	11973068
TNFRSF17_chr16_11960210_11973068	0/0	c0007	555	1	1	0	0	0	0	copy fasta	TNFRSF17	chr16	11960210	11973068
TNFRSF17_chr16_11960210_11973068	0/0	c0008	555	1	0	1	0	0	0	copy fasta	TNFRSF17	chr16	11960210	11973068
TNFRSF17_chr16_11960210_11973068	0/0	c0009	555	1	1	0	0	0	0	copy fasta	TNFRSF17	chr16	11960210	11973068
TNFRSF17_chr16_11960210_11973068	0/0	c0010	555	1	1	0	0	0	0	copy fasta	TNFRSF17	chr16	11960210	11973068
TNFRSF17_chr16_11960210_11973068	0/0	c0011	555	1	1	0	0	0	0	copy fasta	TNFRSF17	chr16	11960210	11973068
TNFRSF17_chr16_11960210_11973068	0/0	c0012	555	1	1	0	0	0	0	copy fasta	TNFRSF17	chr16	11960210	11973068
TNFRSF18_chr1_1198508_1211592	1/1	c0001	726	328	64	61	143	16	42	copy fasta	TNFRSF18	chr1	1198508	1211592
TNFRSF18_chr1_1198508_1211592	0/0	c0002	726	23	22	1	0	0	0	copy fasta	TNFRSF18	chr1	1198508	1211592
TNFRSF18_chr1_1198508_1211592	0/0	c0003	726	9	0	0	9	0	0	copy fasta	TNFRSF18	chr1	1198508	1211592
TNFRSF18_chr1_1198508_1211592	0/0	c0004	726	6	5	1	0	0	0	copy fasta	TNFRSF18	chr1	1198508	1211592
TNFRSF18_chr1_1198508_1211592	0/0	c0005	726	5	1	1	0	2	1	copy fasta	TNFRSF18	chr1	1198508	1211592
TNFRSF18_chr1_1198508_1211592	0/0	c0006	726	3	3	0	0	0	0	copy fasta	TNFRSF18	chr1	1198508	1211592
TNFRSF18_chr1_1198508_1211592	0/0	c0007	726	3	0	0	3	0	0	copy fasta	TNFRSF18	chr1	1198508	1211592
TNFRSF18_chr1_1198508_1211592	0/0	c0008	726	2	2	0	0	0	0	copy fasta	TNFRSF18	chr1	1198508	1211592
TNFRSF18_chr1_1198508_1211592	0/0	c0009	726	1	0	1	0	0	0	copy fasta	TNFRSF18	chr1	1198508	1211592
TNFRSF18_chr1_1198508_1211592	0/0	c0010	726	1	0	0	1	0	0	copy fasta	TNFRSF18	chr1	1198508	1211592
TNFRSF18_chr1_1198508_1211592	0/0	c0011	726	1	0	1	0	0	0	copy fasta	TNFRSF18	chr1	1198508	1211592
TNFRSF18_chr1_1198508_1211592	0/0	c0012	726	1	0	0	1	0	0	copy fasta	TNFRSF18	chr1	1198508	1211592
TNFRSF18_chr1_1198508_1211592	0/0	c0013	726	1	1	0	0	0	0	copy fasta	TNFRSF18	chr1	1198508	1211592
TNFRSF18_chr1_1198508_1211592	0/0	c0014	726	1	0	0	1	0	0	copy fasta	TNFRSF18	chr1	1198508	1211592
TNFRSF18_chr1_1198508_1211592	0/0	c0015	726	1	0	0	0	0	1	copy fasta	TNFRSF18	chr1	1198508	1211592
TNFRSF19_chr13_23565412_23681093	0/0	c0001	1254	155	21	31	83	6	14	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	c0002	1254	59	18	14	20	2	5	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	c0003	1254	47	6	13	25	0	3	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	1/0	c0004	1254	36	9	0	20	0	6	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	c0005	1254	34	6	4	22	1	1	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	c0006	1254	24	11	1	11	0	1	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	c0007	1254	7	7	0	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	c0008	1254	5	4	1	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	c0009	1254	3	1	1	0	1	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	c0010	1254	2	2	0	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	c0011	1254	2	0	0	2	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	c0012	1254	2	2	0	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	c0013	1254	2	1	0	0	1	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	c0014	1254	2	0	1	0	1	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/1	c0015	1254	1	0	0	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	c0016	1254	1	1	0	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	c0017	1254	1	1	0	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	c0018	1254	1	0	0	1	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	c0019	1254	1	0	0	1	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	c0020	1254	1	0	0	1	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF19_chr13_23565412_23681093	0/0	c0021	1254	1	1	0	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093