JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BCL9L_chr11_118891136_118930926	0/0	c0004	4500	14	0	0	14	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	c0005	4500	14	13	1	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	c0006	4500	5	5	0	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	c0007	4500	3	0	2	0	0	1	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	c0008	4500	2	2	0	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	c0009	4500	2	0	1	1	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	c0010	4500	2	1	1	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	c0011	4500	2	2	0	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	c0012	4500	1	0	0	1	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	c0013	4500	1	0	0	0	0	1	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	c0014	4500	1	1	0	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	c0015	4500	1	0	0	0	0	1	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	c0016	4500	1	1	0	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	c0017	4500	1	0	0	1	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	c0018	4500	1	0	0	1	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	c0019	4500	1	1	0	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	c0020	4500	1	1	0	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	c0021	4500	1	1	0	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	c0022	4500	1	1	0	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	c0023	4500	1	0	1	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	c0024	4500	1	1	0	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	c0025	4500	1	0	1	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	c0026	4500	1	0	0	0	0	1	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	c0027	4500	1	1	0	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	c0028	4500	1	1	0	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	c0029	4500	1	1	0	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	c0030	4500	1	1	0	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	c0031	4500	1	1	0	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9L_chr11_118891136_118930926	0/0	c0032	4500	1	0	1	0	0	0	copy fasta	BCL9L	chr11	118891136	118930926
BCL9_chr1_147536501_147631216	1/1	c0001	4281	267	80	35	126	6	18	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	c0002	4281	34	3	7	10	8	6	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	c0003	4281	4	0	2	0	1	1	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	c0004	4281	3	0	2	0	0	1	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	c0005	4281	2	0	2	0	0	0	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	c0006	4281	2	0	1	0	1	0	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	c0007	4281	1	1	0	0	0	0	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	c0008	4281	1	0	0	1	0	0	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	c0009	4281	1	0	0	1	0	0	copy fasta	BCL9	chr1	147536501	147631216
BCL9_chr1_147536501_147631216	0/0	c0010	4281	1	0	1	0	0	0	copy fasta	BCL9	chr1	147536501	147631216
BCLAF1_chr6_136251627_136294846	1/1	c0001	2763	308	86	59	139	4	18	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	c0002	2763	1	0	1	0	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF1_chr6_136251627_136294846	0/0	c0003	2763	1	0	0	1	0	0	copy fasta	BCLAF1	chr6	136251627	136294846
BCLAF3_chrX_19907860_19996061	1/1	c0001	2136	199	59	45	70	7	16	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	c0002	2136	5	5	0	0	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	c0003	2136	2	0	0	2	0	0	copy fasta	BCLAF3	chrX	19907860	19996061
BCLAF3_chrX_19907860_19996061	0/0	c0004	2136	1	0	0	0	0	1	copy fasta	BCLAF3	chrX	19907860	19996061
BCO1_chr16_81233689_81296142	1/0	c0001	1644	160	31	26	79	3	20	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	c0002	1644	56	15	4	34	0	3	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	c0003	1644	52	1	10	29	5	7	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	c0004	1644	45	3	14	20	5	3	copy fasta	BCO1	chr16	81233689	81296142