JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TNFRSF19_chr13_23565412_23681093	0/0	c0022	1254	1	1	0	0	0	0	copy fasta	TNFRSF19	chr13	23565412	23681093
TNFRSF1A_chr12_6323771_6347076	1/0	c0001	1368	317	68	51	158	10	29	copy fasta	TNFRSF1A	chr12	6323771	6347076
TNFRSF1A_chr12_6323771_6347076	0/1	c0002	1368	108	25	25	36	8	13	copy fasta	TNFRSF1A	chr12	6323771	6347076
TNFRSF1A_chr12_6323771_6347076	0/0	c0003	1368	4	3	1	0	0	0	copy fasta	TNFRSF1A	chr12	6323771	6347076
TNFRSF1A_chr12_6323771_6347076	0/0	c0004	1368	3	0	3	0	0	0	copy fasta	TNFRSF1A	chr12	6323771	6347076
TNFRSF1A_chr12_6323771_6347076	0/0	c0005	1368	1	0	0	1	0	0	copy fasta	TNFRSF1A	chr12	6323771	6347076
TNFRSF1A_chr12_6323771_6347076	0/0	c0006	1368	1	0	0	1	0	0	copy fasta	TNFRSF1A	chr12	6323771	6347076
TNFRSF1B_chr1_12161991_12214220	1/0	c0001	1386	277	67	58	109	10	32	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	c0002	1386	55	15	11	18	4	7	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	c0003	1386	8	6	0	1	0	1	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	c0004	1386	7	0	0	7	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	c0005	1386	5	0	0	5	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	c0006	1386	2	2	0	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/1	c0007	1386	2	0	1	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	c0008	1386	1	1	0	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	c0009	1386	1	1	0	0	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	c0010	1386	1	0	0	1	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	c0011	1386	1	0	0	0	0	1	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	c0012	1386	1	0	0	0	0	1	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF1B_chr1_12161991_12214220	0/0	c0013	1386	1	0	0	1	0	0	copy fasta	TNFRSF1B	chr1	12161991	12214220
TNFRSF21_chr6_47226532_47314905	1/1	c0001	1968	328	79	60	137	14	36	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	c0002	1968	11	11	0	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	c0003	1968	3	2	1	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	c0004	1968	1	0	0	0	0	1	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	c0005	1968	1	1	0	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	c0006	1968	1	0	1	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	c0007	1968	1	1	0	0	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	c0008	1968	1	0	0	0	0	1	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF21_chr6_47226532_47314905	0/0	c0009	1968	1	0	0	1	0	0	copy fasta	TNFRSF21	chr6	47226532	47314905
TNFRSF25_chr1_6455786_6471173	1/1	c0001	1254	262	57	61	92	13	37	copy fasta	TNFRSF25	chr1	6455786	6471173
TNFRSF25_chr1_6455786_6471173	0/0	c0002	1254	15	3	7	4	0	1	copy fasta	TNFRSF25	chr1	6455786	6471173
TNFRSF25_chr1_6455786_6471173	0/0	c0003	1254	11	10	1	0	0	0	copy fasta	TNFRSF25	chr1	6455786	6471173
TNFRSF25_chr1_6455786_6471173	0/0	c0004	1254	8	8	0	0	0	0	copy fasta	TNFRSF25	chr1	6455786	6471173
TNFRSF25_chr1_6455786_6471173	0/0	c0005	1254	7	7	0	0	0	0	copy fasta	TNFRSF25	chr1	6455786	6471173
TNFRSF25_chr1_6455786_6471173	0/0	c0006	1254	4	4	0	0	0	0	copy fasta	TNFRSF25	chr1	6455786	6471173
TNFRSF25_chr1_6455786_6471173	0/0	c0007	1254	4	0	4	0	0	0	copy fasta	TNFRSF25	chr1	6455786	6471173
TNFRSF25_chr1_6455786_6471173	0/0	c0008	1254	2	2	0	0	0	0	copy fasta	TNFRSF25	chr1	6455786	6471173
TNFRSF25_chr1_6455786_6471173	0/0	c0009	1254	1	1	0	0	0	0	copy fasta	TNFRSF25	chr1	6455786	6471173
TNFRSF25_chr1_6455786_6471173	0/0	c0010	1254	1	1	0	0	0	0	copy fasta	TNFRSF25	chr1	6455786	6471173
TNFRSF25_chr1_6455786_6471173	0/0	c0011	1254	1	0	0	1	0	0	copy fasta	TNFRSF25	chr1	6455786	6471173
TNFRSF25_chr1_6455786_6471173	0/0	c0012	1254	1	1	0	0	0	0	copy fasta	TNFRSF25	chr1	6455786	6471173
TNFRSF25_chr1_6455786_6471173	0/0	c0013	1254	1	0	0	0	1	0	copy fasta	TNFRSF25	chr1	6455786	6471173
TNFRSF25_chr1_6455786_6471173	0/0	c0014	1254	1	0	1	0	0	0	copy fasta	TNFRSF25	chr1	6455786	6471173
TNFRSF25_chr1_6455786_6471173	0/0	c0015	1254	1	0	0	1	0	0	copy fasta	TNFRSF25	chr1	6455786	6471173
TNFRSF25_chr1_6455786_6471173	0/0	c0016	1254	1	1	0	0	0	0	copy fasta	TNFRSF25	chr1	6455786	6471173
TNFRSF25_chr1_6455786_6471173	0/0	c0017	1254	1	1	0	0	0	0	copy fasta	TNFRSF25	chr1	6455786	6471173
TNFRSF4_chr1_1206340_1219153	0/0	c0001	834	241	38	31	144	4	24	copy fasta	TNFRSF4	chr1	1206340	1219153
TNFRSF4_chr1_1206340_1219153	1/1	c0002	834	155	57	31	36	14	15	copy fasta	TNFRSF4	chr1	1206340	1219153
TNFRSF4_chr1_1206340_1219153	0/0	c0003	834	3	3	0	0	0	0	copy fasta	TNFRSF4	chr1	1206340	1219153
TNFRSF4_chr1_1206340_1219153	0/0	c0004	834	2	1	1	0	0	0	copy fasta	TNFRSF4	chr1	1206340	1219153