JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TNFSF10_chr3_172500508_172528430	1/1	c0002	846	158	23	26	87	3	17	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF10_chr3_172500508_172528430	0/0	c0003	846	16	15	1	0	0	0	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF10_chr3_172500508_172528430	0/0	c0004	846	5	5	0	0	0	0	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF10_chr3_172500508_172528430	0/0	c0005	846	1	1	0	0	0	0	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF10_chr3_172500508_172528430	0/0	c0006	845	1	1	0	0	0	0	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF10_chr3_172500508_172528430	0/0	c0007	846	1	1	0	0	0	0	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF10_chr3_172500508_172528430	0/0	c0008	846	1	0	0	0	1	0	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF10_chr3_172500508_172528430	0/0	c0009	846	1	1	0	0	0	0	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF10_chr3_172500508_172528430	0/0	c0010	846	1	0	0	0	0	1	copy fasta	TNFSF10	chr3	172500508	172528430
TNFSF11_chr13_42569152_42613013	1/1	c0001	954	221	36	39	121	4	19	copy fasta	TNFSF11	chr13	42569152	42613013
TNFSF11_chr13_42569152_42613013	0/0	c0002	954	158	38	33	69	7	11	copy fasta	TNFSF11	chr13	42569152	42613013
TNFSF11_chr13_42569152_42613013	0/0	c0003	954	16	1	0	14	0	1	copy fasta	TNFSF11	chr13	42569152	42613013
TNFSF11_chr13_42569152_42613013	0/0	c0004	954	7	6	0	0	0	1	copy fasta	TNFSF11	chr13	42569152	42613013
TNFSF11_chr13_42569152_42613013	0/0	c0005	954	2	2	0	0	0	0	copy fasta	TNFSF11	chr13	42569152	42613013
TNFSF11_chr13_42569152_42613013	0/0	c0006	954	2	1	1	0	0	0	copy fasta	TNFSF11	chr13	42569152	42613013
TNFSF11_chr13_42569152_42613013	0/0	c0007	954	1	1	0	0	0	0	copy fasta	TNFSF11	chr13	42569152	42613013
TNFSF11_chr13_42569152_42613013	0/0	c0008	954	1	0	1	0	0	0	copy fasta	TNFSF11	chr13	42569152	42613013
TNFSF11_chr13_42569152_42613013	0/0	c0009	954	1	0	0	0	1	0	copy fasta	TNFSF11	chr13	42569152	42613013
TNFSF11_chr13_42569152_42613013	0/0	c0010	954	1	1	0	0	0	0	copy fasta	TNFSF11	chr13	42569152	42613013
TNFSF12_chr17_7544058_7562881	0/0	c0001	750	190	30	41	88	4	27	copy fasta	TNFSF12	chr17	7544058	7562881
TNFSF12_chr17_7544058_7562881	1/0	c0002	750	153	29	22	85	5	11	copy fasta	TNFSF12	chr17	7544058	7562881
TNFSF12_chr17_7544058_7562881	0/1	c0003	750	31	6	15	0	5	4	copy fasta	TNFSF12	chr17	7544058	7562881
TNFSF12_chr17_7544058_7562881	0/0	c0004	750	28	1	2	18	2	5	copy fasta	TNFSF12	chr17	7544058	7562881
TNFSF12_chr17_7544058_7562881	0/0	c0005	750	17	15	1	1	0	0	copy fasta	TNFSF12	chr17	7544058	7562881
TNFSF12_chr17_7544058_7562881	0/0	c0006	750	9	7	1	0	0	1	copy fasta	TNFSF12	chr17	7544058	7562881
TNFSF12_chr17_7544058_7562881	0/0	c0007	750	7	7	0	0	0	0	copy fasta	TNFSF12	chr17	7544058	7562881
TNFSF12_chr17_7544058_7562881	0/0	c0008	750	1	1	0	0	0	0	copy fasta	TNFSF12	chr17	7544058	7562881
TNFSF13B_chr13_108264718_108313478	1/1	c0001	858	380	87	77	160	18	36	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	c0002	858	3	3	0	0	0	0	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13B_chr13_108264718_108313478	0/0	c0003	858	1	0	1	0	0	0	copy fasta	TNFSF13B	chr13	108264718	108313478
TNFSF13_chr17_7553750_7566601	1/0	c0001	753	175	72	26	56	4	16	copy fasta	TNFSF13	chr17	7553750	7566601
TNFSF13_chr17_7553750_7566601	0/1	c0002	753	161	21	39	67	9	24	copy fasta	TNFSF13	chr17	7553750	7566601
TNFSF13_chr17_7553750_7566601	0/0	c0003	753	89	0	10	71	2	6	copy fasta	TNFSF13	chr17	7553750	7566601
TNFSF13_chr17_7553750_7566601	0/0	c0004	753	7	4	2	1	0	0	copy fasta	TNFSF13	chr17	7553750	7566601
TNFSF13_chr17_7553750_7566601	0/0	c0005	753	5	1	3	0	1	0	copy fasta	TNFSF13	chr17	7553750	7566601
TNFSF13_chr17_7553750_7566601	0/0	c0006	753	1	0	0	1	0	0	copy fasta	TNFSF13	chr17	7553750	7566601
TNFSF13_chr17_7553750_7566601	0/0	c0007	753	1	0	0	1	0	0	copy fasta	TNFSF13	chr17	7553750	7566601
TNFSF13_chr17_7553750_7566601	0/0	c0008	753	1	0	0	1	0	0	copy fasta	TNFSF13	chr17	7553750	7566601
TNFSF14_chr19_6656253_6675160	0/1	c0001	723	312	81	59	116	14	41	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	c0002	723	116	11	16	76	4	9	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	1/0	c0003	723	24	0	2	21	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	c0004	723	3	0	3	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	c0005	723	3	0	0	3	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	c0006	723	2	2	0	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	c0007	723	2	0	0	2	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	c0008	723	1	0	0	1	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	c0009	723	1	1	0	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	c0010	723	1	1	0	0	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF14_chr19_6656253_6675160	0/0	c0011	723	1	0	0	1	0	0	copy fasta	TNFSF14	chr19	6656253	6675160
TNFSF15_chr9_114779652_114811039	0/1	c0001	756	273	79	57	90	11	35	copy fasta	TNFSF15	chr9	114779652	114811039