JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TNFSF15_chr9_114779652_114811039	1/0	c0002	756	124	7	21	83	3	9	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	c0003	756	12	3	0	9	0	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF15_chr9_114779652_114811039	0/0	c0004	756	1	1	0	0	0	0	copy fasta	TNFSF15	chr9	114779652	114811039
TNFSF18_chr1_173034202_173055941	1/1	c0001	534	344	86	79	126	15	36	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	c0002	534	1	0	1	0	0	0	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF18_chr1_173034202_173055941	0/0	c0003	534	1	0	0	0	1	0	copy fasta	TNFSF18	chr1	173034202	173055941
TNFSF4_chr1_173178731_173212331	1/1	c0001	552	287	85	64	94	16	26	copy fasta	TNFSF4	chr1	173178731	173212331
TNFSF4_chr1_173178731_173212331	0/0	c0002	552	1	1	0	0	0	0	copy fasta	TNFSF4	chr1	173178731	173212331
TNFSF8_chr9_114896145_114935591	1/0	c0001	705	278	78	41	123	7	28	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/1	c0002	705	125	14	39	50	5	16	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF8_chr9_114896145_114935591	0/0	c0003	705	1	0	0	1	0	0	copy fasta	TNFSF8	chr9	114896145	114935591
TNFSF9_chr19_6526026_6540924	1/1	c0001	765	367	83	82	135	15	50	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	c0002	765	4	0	0	4	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	c0003	765	3	3	0	0	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	c0004	765	2	1	1	0	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	c0005	765	2	2	0	0	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	c0006	765	1	0	0	1	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	c0007	765	1	0	1	0	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	c0008	765	1	0	0	0	1	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	c0009	765	1	0	0	1	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	c0010	765	1	0	0	1	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	c0011	765	1	1	0	0	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	c0012	765	1	0	0	1	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNFSF9_chr19_6526026_6540924	0/0	c0013	765	1	0	0	1	0	0	copy fasta	TNFSF9	chr19	6526026	6540924
TNF_chr6_31570565_31583336	0/1	c0001	702	394	73	70	190	18	42	copy fasta	TNF	chr6	31570565	31583336
TNF_chr6_31570565_31583336	0/0	c0002	702	7	7	0	0	0	0	copy fasta	TNF	chr6	31570565	31583336
TNF_chr6_31570565_31583336	0/0	c0003	702	1	0	1	0	0	0	copy fasta	TNF	chr6	31570565	31583336
TNF_chr6_31570565_31583336	0/0	c0004	702	1	0	1	0	0	0	copy fasta	TNF	chr6	31570565	31583336
TNIK_chr3_171053414_171465405	0/0	c0001	4083	27	21	3	0	1	2	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	c0002	4083	11	9	0	1	0	1	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/1	c0003	4083	10	3	4	0	0	2	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	c0004	4083	8	1	3	3	0	1	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	c0005	4083	4	3	0	1	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	c0006	4083	4	4	0	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	c0007	4083	3	3	0	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	c0008	4083	3	3	0	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	c0009	4083	3	0	2	1	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	c0010	4083	3	0	0	2	0	1	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	c0011	4083	3	0	1	0	1	1	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	c0012	4083	2	1	1	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	c0013	4083	2	0	1	1	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	c0014	4083	2	0	1	0	0	1	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	c0015	4083	2	0	2	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	c0016	4083	1	1	0	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	c0017	4083	1	1	0	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	c0018	4083	1	1	0	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	c0019	4083	1	1	0	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	c0020	4083	1	1	0	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	c0021	4083	1	1	0	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	1/0	c0022	4083	1	0	0	0	0	0	copy fasta	TNIK	chr3	171053414	171465405