JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TNIK_chr3_171053414_171465405	0/0	c0023	4083	1	1	0	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	c0024	4083	1	1	0	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	c0025	4083	1	1	0	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	c0026	4083	1	1	0	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	c0027	4083	1	0	1	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	c0028	4083	1	1	0	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	c0029	4083	1	0	1	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	c0030	4083	1	1	0	0	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	c0031	4083	1	0	0	0	0	1	copy fasta	TNIK	chr3	171053414	171465405
TNIK_chr3_171053414_171465405	0/0	c0032	4083	1	0	0	1	0	0	copy fasta	TNIK	chr3	171053414	171465405
TNIP1_chr5_151024945_151086034	1/0	c0001	1911	287	59	44	148	7	28	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/1	c0002	1911	30	3	10	15	1	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	c0003	1912	17	2	2	8	0	5	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	c0004	1911	17	15	2	0	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	c0005	1911	9	0	3	0	3	3	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	c0006	1911	6	6	0	0	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	c0007	1911	5	0	0	5	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	c0008	1911	3	0	2	0	0	1	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	c0009	1912	3	0	2	1	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	c0010	1911	3	3	0	0	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	c0011	1911	3	0	1	0	1	1	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	c0012	1911	3	0	0	3	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	c0013	1911	2	0	2	0	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	c0014	1911	2	0	0	2	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	c0015	1912	1	1	0	0	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	c0016	1911	1	1	0	0	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	c0017	1911	1	1	0	0	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	c0018	1912	1	0	0	0	0	1	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	c0019	1911	1	1	0	0	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	c0020	1911	1	0	0	0	0	1	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	c0021	1911	1	1	0	0	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	c0022	1912	1	1	0	0	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	c0023	1911	1	0	1	0	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	c0024	1912	1	1	0	0	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	c0025	1912	1	0	1	0	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP1_chr5_151024945_151086034	0/0	c0026	1911	1	1	0	0	0	0	copy fasta	TNIP1	chr5	151024945	151086034
TNIP2_chr4_2736648_2761336	0/0	c0001	1290	140	6	39	72	5	18	copy fasta	TNIP2	chr4	2736648	2761336
TNIP2_chr4_2736648_2761336	0/1	c0002	1290	119	52	20	22	8	16	copy fasta	TNIP2	chr4	2736648	2761336
TNIP2_chr4_2736648_2761336	1/0	c0003	1290	110	18	9	74	2	6	copy fasta	TNIP2	chr4	2736648	2761336
TNIP2_chr4_2736648_2761336	0/0	c0004	1290	11	8	0	2	0	1	copy fasta	TNIP2	chr4	2736648	2761336
TNIP2_chr4_2736648_2761336	0/0	c0005	1290	10	2	1	7	0	0	copy fasta	TNIP2	chr4	2736648	2761336
TNIP2_chr4_2736648_2761336	0/0	c0006	1290	5	0	0	5	0	0	copy fasta	TNIP2	chr4	2736648	2761336
TNIP2_chr4_2736648_2761336	0/0	c0007	1290	4	4	0	0	0	0	copy fasta	TNIP2	chr4	2736648	2761336
TNIP2_chr4_2736648_2761336	0/0	c0008	1290	4	0	2	0	1	1	copy fasta	TNIP2	chr4	2736648	2761336
TNIP2_chr4_2736648_2761336	0/0	c0009	1290	4	0	1	1	0	2	copy fasta	TNIP2	chr4	2736648	2761336
TNIP2_chr4_2736648_2761336	0/0	c0010	1290	2	0	0	2	0	0	copy fasta	TNIP2	chr4	2736648	2761336
TNIP2_chr4_2736648_2761336	0/0	c0011	1290	2	2	0	0	0	0	copy fasta	TNIP2	chr4	2736648	2761336
TNIP2_chr4_2736648_2761336	0/0	c0012	1290	2	0	2	0	0	0	copy fasta	TNIP2	chr4	2736648	2761336
TNIP2_chr4_2736648_2761336	0/0	c0013	1290	2	2	0	0	0	0	copy fasta	TNIP2	chr4	2736648	2761336
TNIP2_chr4_2736648_2761336	0/0	c0014	1290	2	2	0	0	0	0	copy fasta	TNIP2	chr4	2736648	2761336