JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TNIP2_chr4_2736648_2761336	0/0	c0015	1290	2	0	2	0	0	0	copy fasta	TNIP2	chr4	2736648	2761336
TNIP2_chr4_2736648_2761336	0/0	c0016	1290	1	1	0	0	0	0	copy fasta	TNIP2	chr4	2736648	2761336
TNIP2_chr4_2736648_2761336	0/0	c0017	1290	1	1	0	0	0	0	copy fasta	TNIP2	chr4	2736648	2761336
TNIP2_chr4_2736648_2761336	0/0	c0018	1290	1	0	0	1	0	0	copy fasta	TNIP2	chr4	2736648	2761336
TNIP2_chr4_2736648_2761336	0/0	c0019	1290	1	0	0	1	0	0	copy fasta	TNIP2	chr4	2736648	2761336
TNIP2_chr4_2736648_2761336	0/0	c0020	1290	1	0	0	1	0	0	copy fasta	TNIP2	chr4	2736648	2761336
TNIP3_chr4_121126408_121169321	1/1	c0001	978	224	61	56	66	13	26	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	c0002	978	39	10	3	12	1	13	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	c0003	960	13	13	0	0	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	c0004	960	7	0	3	2	2	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	c0005	978	3	3	0	0	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	c0006	978	2	2	0	0	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	c0007	978	2	0	0	0	0	2	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	c0008	978	1	0	0	0	0	1	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	c0009	978	1	1	0	0	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	c0010	978	1	1	0	0	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNIP3_chr4_121126408_121169321	0/0	c0011	978	1	1	0	0	0	0	copy fasta	TNIP3	chr4	121126408	121169321
TNK1_chr17_7376089_7394742	0/0	c0001	1986	108	0	31	63	10	4	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/1	c0002	1986	87	20	19	21	5	21	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	c0003	1986	82	25	14	35	1	7	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	c0004	1986	53	5	7	31	0	10	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	1/0	c0005	1986	42	35	3	2	0	1	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	c0006	1986	30	0	5	25	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	c0007	1986	7	0	0	7	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	c0008	1986	5	1	4	0	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	c0009	1986	4	0	0	4	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	c0010	1986	3	0	0	3	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	c0011	1986	3	0	0	3	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	c0012	1986	3	3	0	0	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	c0013	1986	2	2	0	0	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	c0014	1986	2	2	0	0	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	c0015	1986	2	0	2	0	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	c0016	1986	2	0	0	2	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	c0017	1986	1	0	0	1	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	c0018	1986	1	0	0	1	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	c0019	1986	1	0	0	1	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	c0020	1986	1	0	0	0	0	1	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	c0021	1986	1	1	0	0	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	c0022	1986	1	1	0	0	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	c0023	1986	1	0	0	1	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	c0024	1986	1	0	0	1	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	c0025	1986	1	0	0	1	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	c0026	1986	1	0	0	1	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	c0027	1986	1	1	0	0	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	c0028	1986	1	0	0	1	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	c0029	1986	1	1	0	0	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	c0030	1986	1	0	1	0	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	c0031	1986	1	0	0	1	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	c0032	1986	1	1	0	0	0	0	copy fasta	TNK1	chr17	7376089	7394742
TNK1_chr17_7376089_7394742	0/0	c0033	1986	1	0	0	1	0	0	copy fasta	TNK1	chr17	7376089	7394742