JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TNK2_chr3_195858364_195913551	1/0	c0001	3168	103	21	24	40	4	13	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0002	3168	48	29	6	10	2	1	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0003	3168	37	0	2	32	0	3	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0004	3169	15	1	5	6	0	3	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0005	3168	13	0	7	0	3	3	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/1	c0006	3168	13	5	0	4	1	2	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0007	3168	10	0	0	10	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0008	3169	7	2	2	2	0	1	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0009	3168	7	0	0	7	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0010	3169	6	0	4	1	0	1	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0011	3168	6	4	0	2	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0012	3168	6	0	1	2	0	3	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0013	3168	5	3	0	2	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0014	3168	4	4	0	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0015	3168	4	0	4	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0016	3168	3	3	0	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0017	3168	3	3	0	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0018	3169	3	0	0	3	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0019	3168	3	0	0	3	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0020	3168	3	0	0	0	3	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0021	3168	3	1	2	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0022	3168	3	0	0	3	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0023	3169	2	1	1	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0024	3168	2	0	1	0	1	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0025	3169	2	1	1	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0026	3169	2	2	0	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0027	3169	2	1	0	0	0	1	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0028	3168	2	0	0	0	0	2	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0029	3168	2	0	0	2	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0030	3168	2	0	2	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0031	3168	2	0	0	2	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0032	3168	2	0	0	2	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0033	3168	1	0	0	1	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0034	3168	1	1	0	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0035	3170	1	1	0	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0036	3168	1	0	1	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0037	3168	1	1	0	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0038	3169	1	0	1	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0039	3168	1	0	1	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0040	3168	1	0	0	1	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0041	3169	1	0	0	1	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0042	3168	1	1	0	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0043	3168	1	0	0	1	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0044	3169	1	1	0	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0045	3168	1	1	0	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0046	3168	1	0	0	1	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0047	3168	1	1	0	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0048	3169	1	0	0	1	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0049	3168	1	0	1	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0050	3168	1	1	0	0	0	0	copy fasta	TNK2	chr3	195858364	195913551