JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TNK2_chr3_195858364_195913551	0/0	c0051	3169	1	0	0	1	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0052	3168	1	0	0	1	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0053	3168	1	0	0	1	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0054	3168	1	0	0	0	0	1	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0055	3168	1	0	0	1	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0056	3168	1	0	0	1	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0057	3169	1	1	0	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0058	3168	1	1	0	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0059	3168	1	0	1	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0060	3169	1	1	0	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0061	3168	1	1	0	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0062	3168	1	1	0	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0063	3169	1	0	0	0	0	1	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0064	3168	1	0	0	0	0	1	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0065	3169	1	0	0	0	0	1	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0066	3169	1	0	0	1	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0067	3170	1	0	1	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0068	3169	1	0	1	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0069	3169	1	0	0	1	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0070	3168	1	0	0	1	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0071	3168	1	0	0	1	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0072	3170	1	0	1	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0073	3169	1	0	1	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0074	3169	1	0	0	0	0	1	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0075	3168	1	0	0	1	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0076	3169	1	0	1	0	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0077	3168	1	0	0	0	0	1	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0078	3168	1	0	0	0	0	1	copy fasta	TNK2	chr3	195858364	195913551
TNK2_chr3_195858364_195913551	0/0	c0079	3169	1	0	0	1	0	0	copy fasta	TNK2	chr3	195858364	195913551
TNKS1BP1_chr11_57294642_57329952	0/0	c0001	5190	125	8	27	61	5	24	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0002	5190	87	33	10	35	3	6	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	1/0	c0003	5190	19	15	1	0	0	2	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0004	5190	11	0	5	1	3	2	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0005	5190	11	0	11	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0006	5190	8	1	0	0	2	5	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/1	c0007	5190	7	0	5	0	1	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0008	5190	6	0	1	4	0	1	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0009	5190	5	5	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0010	5190	4	4	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0011	5190	4	2	0	0	2	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0012	5190	3	0	3	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0013	5190	3	0	3	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0014	5190	3	3	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0015	5190	3	0	0	3	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0016	5190	3	0	2	0	0	1	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0017	5190	3	3	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0018	5190	2	2	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0019	5190	2	2	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0020	5190	2	2	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0021	5190	2	1	1	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952