JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TNKS1BP1_chr11_57294642_57329952	0/0	c0022	5190	2	0	2	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0023	5190	2	0	0	2	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0024	5190	2	1	1	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0025	5190	2	2	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0026	5190	1	1	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0027	5190	1	0	0	1	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0028	5190	1	1	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0029	5190	1	1	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0030	5190	1	1	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0031	5190	1	1	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0032	5190	1	1	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0033	5190	1	1	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0034	5190	1	1	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0035	5190	1	0	1	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0036	5190	1	0	0	1	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0037	5190	1	0	0	0	1	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0038	5190	1	1	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0039	5190	1	1	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0040	5190	1	0	0	1	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0041	5190	1	0	0	0	1	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0042	5190	1	0	0	1	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0043	5190	1	0	0	1	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0044	5190	1	0	1	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0045	5190	1	0	0	0	0	1	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0046	5190	1	1	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0047	5190	1	0	1	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0048	5190	1	1	0	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0049	5190	1	0	1	0	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS1BP1_chr11_57294642_57329952	0/0	c0050	5190	1	0	0	1	0	0	copy fasta	TNKS1BP1	chr11	57294642	57329952
TNKS2_chr10_91793426_91870475	1/1	c0001	3501	225	66	41	83	11	22	copy fasta	TNKS2	chr10	91793426	91870475
TNKS2_chr10_91793426_91870475	0/0	c0002	3501	105	11	19	54	3	18	copy fasta	TNKS2	chr10	91793426	91870475
TNKS2_chr10_91793426_91870475	0/0	c0003	3501	6	6	0	0	0	0	copy fasta	TNKS2	chr10	91793426	91870475
TNKS2_chr10_91793426_91870475	0/0	c0004	3501	3	3	0	0	0	0	copy fasta	TNKS2	chr10	91793426	91870475
TNKS2_chr10_91793426_91870475	0/0	c0005	3501	3	3	0	0	0	0	copy fasta	TNKS2	chr10	91793426	91870475
TNKS2_chr10_91793426_91870475	0/0	c0006	3501	1	0	0	1	0	0	copy fasta	TNKS2	chr10	91793426	91870475
TNKS2_chr10_91793426_91870475	0/0	c0007	3501	1	0	0	1	0	0	copy fasta	TNKS2	chr10	91793426	91870475
TNKS2_chr10_91793426_91870475	0/0	c0008	3501	1	1	0	0	0	0	copy fasta	TNKS2	chr10	91793426	91870475
TNKS2_chr10_91793426_91870475	0/0	c0009	3501	1	0	0	1	0	0	copy fasta	TNKS2	chr10	91793426	91870475
TNKS_chr8_9550912_9787346	0/1	c0001	3984	101	23	22	30	4	21	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	c0002	3984	46	14	15	16	0	1	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	c0003	3984	29	4	3	14	0	8	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	c0004	3984	25	1	7	11	0	6	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	c0005	3984	16	4	0	12	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	c0006	3984	10	9	1	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	c0007	3984	6	6	0	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	c0008	3984	5	5	0	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	c0009	3984	4	2	1	1	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	c0010	3984	3	3	0	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	c0011	3984	3	0	0	1	2	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	1/0	c0012	3984	3	2	0	0	0	0	copy fasta	TNKS	chr8	9550912	9787346