JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TNKS_chr8_9550912_9787346	0/0	c0013	3984	2	0	2	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	c0014	3984	2	0	0	2	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	c0015	3984	2	1	0	1	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	c0016	3984	2	2	0	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	c0017	3984	1	0	1	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	c0018	3984	1	0	0	1	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	c0019	3984	1	0	0	1	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	c0020	3984	1	0	0	1	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	c0021	3984	1	1	0	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	c0022	3984	1	0	0	0	0	1	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	c0023	3984	1	1	0	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	c0024	3984	1	0	0	0	0	1	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	c0025	3984	1	0	0	1	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	c0026	3984	1	0	1	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	c0027	3984	1	1	0	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	c0028	3984	1	0	1	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNKS_chr8_9550912_9787346	0/0	c0029	3984	1	1	0	0	0	0	copy fasta	TNKS	chr8	9550912	9787346
TNMD_chrX_100579936_100604885	1/1	c0001	954	161	52	31	51	8	17	copy fasta	TNMD	chrX	100579936	100604885
TNMD_chrX_100579936_100604885	0/0	c0002	954	154	23	27	84	5	15	copy fasta	TNMD	chrX	100579936	100604885
TNMD_chrX_100579936_100604885	0/0	c0003	954	8	0	0	8	0	0	copy fasta	TNMD	chrX	100579936	100604885
TNMD_chrX_100579936_100604885	0/0	c0004	954	3	3	0	0	0	0	copy fasta	TNMD	chrX	100579936	100604885
TNMD_chrX_100579936_100604885	0/0	c0005	954	2	2	0	0	0	0	copy fasta	TNMD	chrX	100579936	100604885
TNNC1_chr3_52446100_52459041	1/1	c0001	486	360	90	80	136	16	36	copy fasta	TNNC1	chr3	52446100	52459041
TNNC1_chr3_52446100_52459041	0/0	c0002	486	2	0	0	2	0	0	copy fasta	TNNC1	chr3	52446100	52459041
TNNC2_chr20_45818214_45832312	1/0	c0001	483	229	78	32	85	8	25	copy fasta	TNNC2	chr20	45818214	45832312
TNNC2_chr20_45818214_45832312	0/1	c0002	483	182	16	35	103	8	19	copy fasta	TNNC2	chr20	45818214	45832312
TNNC2_chr20_45818214_45832312	0/0	c0003	483	1	0	1	0	0	0	copy fasta	TNNC2	chr20	45818214	45832312
TNNI1_chr1_201398784_201426730	1/1	c0001	564	414	93	81	194	15	29	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	c0002	564	44	1	2	23	1	17	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	c0003	564	1	0	1	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	c0004	564	1	0	0	1	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	c0005	564	1	1	0	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI1_chr1_201398784_201426730	0/0	c0006	564	1	1	0	0	0	0	copy fasta	TNNI1	chr1	201398784	201426730
TNNI2_chr11_1833981_1846678	0/1	c0001	549	404	59	76	214	15	39	copy fasta	TNNI2	chr11	1833981	1846678
TNNI2_chr11_1833981_1846678	1/0	c0002	549	53	34	10	1	1	6	copy fasta	TNNI2	chr11	1833981	1846678
TNNI2_chr11_1833981_1846678	0/0	c0003	549	4	4	0	0	0	0	copy fasta	TNNI2	chr11	1833981	1846678
TNNI2_chr11_1833981_1846678	0/0	c0004	549	3	0	0	3	0	0	copy fasta	TNNI2	chr11	1833981	1846678
TNNI2_chr11_1833981_1846678	0/0	c0005	549	2	2	0	0	0	0	copy fasta	TNNI2	chr11	1833981	1846678
TNNI2_chr11_1833981_1846678	0/0	c0006	549	1	0	0	0	0	1	copy fasta	TNNI2	chr11	1833981	1846678
TNNI2_chr11_1833981_1846678	0/0	c0007	549	1	1	0	0	0	0	copy fasta	TNNI2	chr11	1833981	1846678
TNNI3K_chr1_74230387_74549428	1/1	c0001	2508	173	81	36	38	4	12	copy fasta	TNNI3K	chr1	74230387	74549428
TNNI3K_chr1_74230387_74549428	0/0	c0002	2508	7	0	0	7	0	0	copy fasta	TNNI3K	chr1	74230387	74549428
TNNI3K_chr1_74230387_74549428	0/0	c0003	2508	3	3	0	0	0	0	copy fasta	TNNI3K	chr1	74230387	74549428
TNNI3K_chr1_74230387_74549428	0/0	c0004	2508	2	0	0	2	0	0	copy fasta	TNNI3K	chr1	74230387	74549428
TNNI3K_chr1_74230387_74549428	0/0	c0005	2508	2	0	0	2	0	0	copy fasta	TNNI3K	chr1	74230387	74549428
TNNI3K_chr1_74230387_74549428	0/0	c0006	2508	1	1	0	0	0	0	copy fasta	TNNI3K	chr1	74230387	74549428
TNNI3K_chr1_74230387_74549428	0/0	c0007	2508	1	1	0	0	0	0	copy fasta	TNNI3K	chr1	74230387	74549428
TNNI3K_chr1_74230387_74549428	0/0	c0008	2508	1	1	0	0	0	0	copy fasta	TNNI3K	chr1	74230387	74549428
TNNI3K_chr1_74230387_74549428	0/0	c0009	2508	1	1	0	0	0	0	copy fasta	TNNI3K	chr1	74230387	74549428
TNNI3K_chr1_74230387_74549428	0/0	c0010	2508	1	0	0	1	0	0	copy fasta	TNNI3K	chr1	74230387	74549428