JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BCO1_chr16_81233689_81296142	0/0	c0005	1644	39	28	9	0	1	1	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	c0006	1644	21	4	8	2	3	4	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	c0007	1644	5	5	0	0	0	0	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	c0008	1644	3	0	3	0	0	0	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	c0009	1644	3	0	0	1	0	2	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	c0010	1644	2	0	0	1	0	1	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/1	c0011	1644	1	0	0	0	0	0	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	c0012	1644	1	1	0	0	0	0	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	c0013	1644	1	1	0	0	0	0	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	c0014	1644	1	1	0	0	0	0	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	c0015	1644	1	1	0	0	0	0	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	c0016	1644	1	1	0	0	0	0	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	c0017	1644	1	1	0	0	0	0	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	c0018	1644	1	0	1	0	0	0	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	c0019	1644	1	0	0	0	0	1	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	c0020	1644	1	1	0	0	0	0	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	c0021	1644	1	0	0	0	0	1	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	c0022	1644	1	0	0	0	0	1	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	c0023	1644	1	0	0	0	1	0	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	c0024	1644	1	0	1	0	0	0	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	c0025	1644	1	0	0	1	0	0	copy fasta	BCO1	chr16	81233689	81296142
BCO1_chr16_81233689_81296142	0/0	c0026	1644	1	0	0	1	0	0	copy fasta	BCO1	chr16	81233689	81296142
BCO2_chr11_112170512_112223946	0/1	c0001	1740	330	65	74	149	9	32	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	c0002	1740	8	1	3	0	1	3	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	c0003	1740	7	3	0	0	1	3	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	c0004	1740	4	4	0	0	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	c0005	1740	4	3	1	0	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	c0006	1740	3	3	0	0	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	c0007	1740	3	3	0	0	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	c0008	1740	2	0	0	2	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	c0009	1740	2	2	0	0	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	c0010	1740	2	2	0	0	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	1/0	c0011	1740	2	1	0	0	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	c0012	1740	2	0	0	2	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	c0013	1740	1	1	0	0	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	c0014	1740	1	0	0	1	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	c0015	1740	1	0	0	0	1	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	c0016	1740	1	0	0	1	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	c0017	1740	1	1	0	0	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	c0018	1740	1	0	1	0	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	c0019	1740	1	0	1	0	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	c0020	1740	1	1	0	0	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	c0021	1740	1	1	0	0	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	c0022	1740	1	1	0	0	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCO2_chr11_112170512_112223946	0/0	c0023	1740	1	0	0	1	0	0	copy fasta	BCO2	chr11	112170512	112223946
BCORL1_chrX_129977635_130063071	1/1	c0001	5358	155	36	27	72	5	13	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	c0002	5358	11	9	2	0	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	c0003	5358	9	9	0	0	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	c0004	5358	5	0	5	0	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	c0005	5358	4	4	0	0	0	0	copy fasta	BCORL1	chrX	129977635	130063071