JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TNNI3K_chr1_74230387_74549428	0/0	c0011	2508	1	1	0	0	0	0	copy fasta	TNNI3K	chr1	74230387	74549428
TNNI3K_chr1_74230387_74549428	0/0	c0012	2508	1	1	0	0	0	0	copy fasta	TNNI3K	chr1	74230387	74549428
TNNI3_chr19_55146767_55162732	1/1	c0001	633	353	72	69	152	15	43	copy fasta	TNNI3	chr19	55146767	55162732
TNNI3_chr19_55146767_55162732	0/0	c0002	633	16	13	3	0	0	0	copy fasta	TNNI3	chr19	55146767	55162732
TNNI3_chr19_55146767_55162732	0/0	c0003	633	10	1	1	4	0	4	copy fasta	TNNI3	chr19	55146767	55162732
TNNI3_chr19_55146767_55162732	0/0	c0004	633	5	0	3	0	1	1	copy fasta	TNNI3	chr19	55146767	55162732
TNNI3_chr19_55146767_55162732	0/0	c0005	633	1	1	0	0	0	0	copy fasta	TNNI3	chr19	55146767	55162732
TNNI3_chr19_55146767_55162732	0/0	c0006	633	1	0	0	1	0	0	copy fasta	TNNI3	chr19	55146767	55162732
TNNI3_chr19_55146767_55162732	0/0	c0007	633	1	1	0	0	0	0	copy fasta	TNNI3	chr19	55146767	55162732
TNNI3_chr19_55146767_55162732	0/0	c0008	633	1	0	0	1	0	0	copy fasta	TNNI3	chr19	55146767	55162732
TNNT1_chr19_55127698_55154206	1/1	c0001	837	295	83	57	106	11	36	copy fasta	TNNT1	chr19	55127698	55154206
TNNT1_chr19_55127698_55154206	0/0	c0002	837	10	2	5	0	1	2	copy fasta	TNNT1	chr19	55127698	55154206
TNNT1_chr19_55127698_55154206	0/0	c0003	837	8	0	2	6	0	0	copy fasta	TNNT1	chr19	55127698	55154206
TNNT1_chr19_55127698_55154206	0/0	c0004	837	2	2	0	0	0	0	copy fasta	TNNT1	chr19	55127698	55154206
TNNT1_chr19_55127698_55154206	0/0	c0005	837	1	0	0	1	0	0	copy fasta	TNNT1	chr19	55127698	55154206
TNNT1_chr19_55127698_55154206	0/0	c0006	837	1	0	0	1	0	0	copy fasta	TNNT1	chr19	55127698	55154206
TNNT1_chr19_55127698_55154206	0/0	c0007	837	1	1	0	0	0	0	copy fasta	TNNT1	chr19	55127698	55154206
TNNT1_chr19_55127698_55154206	0/0	c0008	837	1	0	0	1	0	0	copy fasta	TNNT1	chr19	55127698	55154206
TNNT1_chr19_55127698_55154206	0/0	c0009	837	1	0	0	1	0	0	copy fasta	TNNT1	chr19	55127698	55154206
TNNT2_chr1_201354014_201382680	0/0	c0001	897	206	30	52	93	9	22	copy fasta	TNNT2	chr1	201354014	201382680
TNNT2_chr1_201354014_201382680	1/1	c0002	897	170	31	19	102	3	13	copy fasta	TNNT2	chr1	201354014	201382680
TNNT2_chr1_201354014_201382680	0/0	c0003	897	33	12	0	13	3	5	copy fasta	TNNT2	chr1	201354014	201382680
TNNT2_chr1_201354014_201382680	0/0	c0004	897	31	22	4	0	1	4	copy fasta	TNNT2	chr1	201354014	201382680
TNNT2_chr1_201354014_201382680	0/0	c0005	897	1	0	1	0	0	0	copy fasta	TNNT2	chr1	201354014	201382680
TNNT2_chr1_201354014_201382680	0/0	c0006	897	1	1	0	0	0	0	copy fasta	TNNT2	chr1	201354014	201382680
TNNT3_chr11_1914703_1943702	1/0	c0001	777	97	33	18	20	8	17	copy fasta	TNNT3	chr11	1914703	1943702
TNNT3_chr11_1914703_1943702	0/0	c0002	777	21	1	6	12	0	2	copy fasta	TNNT3	chr11	1914703	1943702
TNNT3_chr11_1914703_1943702	0/0	c0003	774	5	2	0	0	0	3	copy fasta	TNNT3	chr11	1914703	1943702
TNNT3_chr11_1914703_1943702	0/0	c0004	777	2	2	0	0	0	0	copy fasta	TNNT3	chr11	1914703	1943702
TNN_chr1_175062833_175153075	0/0	c0001	3900	32	12	8	4	3	5	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0002	3900	25	1	0	18	1	5	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0003	3900	22	0	7	15	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0004	3900	18	0	7	8	0	3	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0005	3900	16	4	3	4	3	2	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0006	3900	16	8	1	3	1	3	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0007	3900	16	0	0	14	1	1	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0008	3900	15	0	2	12	0	1	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0009	3900	15	12	1	0	1	1	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0010	3900	12	1	4	7	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0011	3900	11	0	5	5	1	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0012	3900	9	0	1	4	0	4	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0013	3900	9	0	1	8	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0014	3900	8	6	1	0	0	1	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0015	3900	7	0	0	7	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0016	3900	6	4	1	0	1	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0017	3900	6	0	2	1	0	3	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0018	3900	5	0	0	4	0	1	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0019	3900	5	1	1	2	0	1	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0020	3900	5	0	0	5	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0021	3900	4	0	2	0	2	0	copy fasta	TNN	chr1	175062833	175153075