JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TNN_chr1_175062833_175153075	0/0	c0022	3900	4	0	0	3	0	1	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0023	3900	4	4	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0024	3900	4	3	0	1	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0025	3900	4	0	1	3	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0026	3900	4	2	2	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0027	3900	3	0	0	0	0	3	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0028	3900	3	3	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0029	3900	3	3	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0030	3900	3	0	0	2	0	1	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0031	3900	3	2	0	0	0	1	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	1/0	c0032	3900	2	0	1	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0033	3900	2	0	0	2	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0034	3900	2	2	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0035	3900	2	0	2	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0036	3900	2	0	1	0	0	1	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0037	3900	2	2	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0038	3900	2	1	0	0	0	1	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0039	3900	2	2	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0040	3900	2	0	0	2	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0041	3900	2	0	0	2	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0042	3900	2	2	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0043	3900	2	2	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0044	3900	1	0	0	1	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0045	3900	1	0	1	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0046	3900	1	0	0	1	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0047	3900	1	0	0	1	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0048	3900	1	0	0	0	1	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0049	3900	1	0	0	1	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0050	3900	1	0	0	1	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0051	3900	1	0	0	0	0	1	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0052	3900	1	0	0	1	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0053	3900	1	0	0	1	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0054	3900	1	0	0	0	0	1	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/1	c0055	3900	1	0	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0056	3900	1	0	0	1	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0057	3900	1	0	0	1	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0058	3900	1	1	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0059	3900	1	0	1	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0060	3900	1	1	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0061	3900	1	0	0	1	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0062	3900	1	0	0	1	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0063	3900	1	0	1	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0064	3900	1	0	0	0	1	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0065	3900	1	1	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0066	3900	1	1	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0067	3636	1	0	1	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0068	3900	1	0	1	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0069	3900	1	0	1	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0070	3900	1	1	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0071	3900	1	1	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075