JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TNN_chr1_175062833_175153075	0/0	c0072	3900	1	1	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0073	3900	1	1	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0074	3900	1	1	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0075	3900	1	0	1	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0076	3900	1	0	0	1	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0077	3900	1	0	0	0	0	1	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0078	3900	1	1	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0079	3900	1	1	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0080	3900	1	1	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0081	3900	1	0	0	0	0	1	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0082	3900	1	1	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0083	3900	1	0	1	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0084	3900	1	0	1	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0085	3900	1	0	0	1	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0086	3900	1	0	0	0	0	1	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0087	3900	1	1	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0088	3900	1	0	0	1	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0089	3900	1	0	0	1	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0090	3900	1	1	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0091	3900	1	0	1	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0092	3900	1	1	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0093	3900	1	1	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0094	3900	1	0	0	1	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0095	3900	1	1	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNN_chr1_175062833_175153075	0/0	c0096	3900	1	1	0	0	0	0	copy fasta	TNN	chr1	175062833	175153075
TNP1_chr2_216854458_216865064	1/1	c0001	168	396	92	63	180	18	41	copy fasta	TNP1	chr2	216854458	216865064
TNP1_chr2_216854458_216865064	0/0	c0002	168	1	0	0	0	0	1	copy fasta	TNP1	chr2	216854458	216865064
TNP1_chr2_216854458_216865064	0/0	c0003	168	1	0	1	0	0	0	copy fasta	TNP1	chr2	216854458	216865064
TNP2_chr16_11262857_11274325	1/0	c0001	417	281	61	42	149	2	26	copy fasta	TNP2	chr16	11262857	11274325
TNP2_chr16_11262857_11274325	0/1	c0002	417	119	19	28	41	14	16	copy fasta	TNP2	chr16	11262857	11274325
TNP2_chr16_11262857_11274325	0/0	c0003	417	8	7	1	0	0	0	copy fasta	TNP2	chr16	11262857	11274325
TNP2_chr16_11262857_11274325	0/0	c0004	417	8	3	5	0	0	0	copy fasta	TNP2	chr16	11262857	11274325
TNP2_chr16_11262857_11274325	0/0	c0005	417	3	1	2	0	0	0	copy fasta	TNP2	chr16	11262857	11274325
TNP2_chr16_11262857_11274325	0/0	c0006	417	1	1	0	0	0	0	copy fasta	TNP2	chr16	11262857	11274325
TNP2_chr16_11262857_11274325	0/0	c0007	417	1	0	0	1	0	0	copy fasta	TNP2	chr16	11262857	11274325
TNP2_chr16_11262857_11274325	0/0	c0008	417	1	0	0	1	0	0	copy fasta	TNP2	chr16	11262857	11274325
TNP2_chr16_11262857_11274325	0/0	c0009	417	1	0	0	1	0	0	copy fasta	TNP2	chr16	11262857	11274325
TNP2_chr16_11262857_11274325	0/0	c0010	417	1	0	0	1	0	0	copy fasta	TNP2	chr16	11262857	11274325
TNPO1_chr5_72811661_72919388	0/1	c0001	2697	246	67	38	108	5	27	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	1/0	c0002	2697	73	27	12	23	1	9	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	c0003	2697	1	0	0	1	0	0	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	c0004	2697	1	0	0	1	0	0	copy fasta	TNPO1	chr5	72811661	72919388
TNPO1_chr5_72811661_72919388	0/0	c0005	2697	1	0	0	1	0	0	copy fasta	TNPO1	chr5	72811661	72919388
TNPO2_chr19_12694201_12728932	1/1	c0001	2694	249	27	55	116	14	35	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	c0002	2694	42	39	3	0	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	c0003	2694	5	5	0	0	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	c0004	2694	5	5	0	0	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	c0005	2694	4	4	0	0	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	c0006	2694	3	0	0	3	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	c0007	2694	3	3	0	0	0	0	copy fasta	TNPO2	chr19	12694201	12728932