JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TNPO2_chr19_12694201_12728932	0/0	c0008	2694	2	2	0	0	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	c0009	2694	1	1	0	0	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	c0010	2694	1	0	1	0	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	c0011	2694	1	0	0	1	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	c0012	2694	1	1	0	0	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	c0013	2694	1	0	0	0	0	1	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	c0014	2694	1	1	0	0	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO2_chr19_12694201_12728932	0/0	c0015	2694	1	0	1	0	0	0	copy fasta	TNPO2	chr19	12694201	12728932
TNPO3_chr7_128949185_129060111	1/0	c0001	2772	140	31	30	57	4	17	copy fasta	TNPO3	chr7	128949185	129060111
TNPO3_chr7_128949185_129060111	0/1	c0002	2772	104	12	22	56	2	11	copy fasta	TNPO3	chr7	128949185	129060111
TNPO3_chr7_128949185_129060111	0/0	c0003	2772	61	39	4	16	2	0	copy fasta	TNPO3	chr7	128949185	129060111
TNPO3_chr7_128949185_129060111	0/0	c0004	2772	24	1	1	18	0	4	copy fasta	TNPO3	chr7	128949185	129060111
TNPO3_chr7_128949185_129060111	0/0	c0005	2772	3	3	0	0	0	0	copy fasta	TNPO3	chr7	128949185	129060111
TNPO3_chr7_128949185_129060111	0/0	c0006	2772	1	0	0	0	0	1	copy fasta	TNPO3	chr7	128949185	129060111
TNPO3_chr7_128949185_129060111	0/0	c0007	2772	1	0	0	0	0	1	copy fasta	TNPO3	chr7	128949185	129060111
TNPO3_chr7_128949185_129060111	0/0	c0008	2772	1	0	1	0	0	0	copy fasta	TNPO3	chr7	128949185	129060111
TNPO3_chr7_128949185_129060111	0/0	c0009	2772	1	1	0	0	0	0	copy fasta	TNPO3	chr7	128949185	129060111
TNPO3_chr7_128949185_129060111	0/0	c0010	2772	1	1	0	0	0	0	copy fasta	TNPO3	chr7	128949185	129060111
TNPO3_chr7_128949185_129060111	0/0	c0011	2772	1	0	0	1	0	0	copy fasta	TNPO3	chr7	128949185	129060111
TNRC18_chr7_5301811_5428834	0/0	c0001	8907	7	2	1	4	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0002	8907	7	1	4	0	1	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0003	8907	5	0	0	5	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0004	8907	4	0	0	3	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0005	8907	4	1	3	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0006	8907	4	1	2	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0007	8907	3	0	0	3	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0008	8913	3	0	3	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0009	8907	3	0	0	0	2	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0010	8907	3	2	1	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0011	8907	3	0	2	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0012	8907	3	0	2	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0013	8907	3	3	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0014	8907	3	0	0	3	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0015	8907	2	0	1	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0016	8907	2	0	2	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0017	8908	2	0	0	2	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0018	8908	2	0	1	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0019	8907	2	0	2	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0020	8907	2	0	0	2	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0021	8907	2	0	2	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0022	8907	2	2	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0023	8901	2	0	0	2	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0024	8908	2	1	0	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0025	8907	2	1	0	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0026	8907	2	0	0	2	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0027	8907	2	0	0	0	0	2	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0028	8907	2	1	0	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0029	8907	2	2	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0030	8907	2	2	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0031	8907	2	2	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834