JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TNRC18_chr7_5301811_5428834	0/0	c0082	8907	1	0	0	0	1	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0083	8907	1	0	0	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0084	8908	1	0	0	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0085	8908	1	0	1	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0086	8908	1	0	0	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0087	8907	1	0	0	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0088	8907	1	0	0	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0089	8907	1	0	0	0	1	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0090	8919	1	0	0	0	1	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0091	8907	1	0	1	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0092	8907	1	0	0	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0093	8907	1	0	1	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0094	8907	1	0	0	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0095	8907	1	0	1	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0096	8907	1	0	0	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0097	8907	1	0	0	0	1	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0098	8907	1	0	1	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0099	8907	1	0	1	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0100	8907	1	0	1	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0101	8907	1	0	0	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0102	8907	1	1	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0103	8910	1	1	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0104	8907	1	0	0	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0105	8907	1	0	1	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0106	8907	1	0	0	0	1	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0107	8907	1	0	0	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0108	8907	1	0	0	0	1	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0109	8907	1	0	1	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0110	8913	1	0	0	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0111	8907	1	0	0	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0112	8907	1	1	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0113	8907	1	0	0	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0114	8907	1	0	0	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0115	8907	1	0	0	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0116	8925	1	0	0	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0117	8907	1	0	0	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0118	8913	1	0	0	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0119	8907	1	0	0	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0120	8907	1	0	0	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0121	8880	1	0	0	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0122	8907	1	1	0	0	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0123	8908	1	0	0	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0124	8908	1	0	0	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0125	8907	1	0	0	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0126	8907	1	0	0	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0127	8907	1	0	0	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0128	8904	1	0	0	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0129	8907	1	0	0	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0130	8907	1	0	0	1	0	0	copy fasta	TNRC18	chr7	5301811	5428834
TNRC18_chr7_5301811_5428834	0/0	c0131	8907	1	0	0	0	0	1	copy fasta	TNRC18	chr7	5301811	5428834