JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TNRC6B_chr22_40172925_40340808	0/0	c0005	5502	2	0	0	0	2	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	c0006	5502	2	2	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	c0007	5502	2	0	2	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	c0008	5502	2	0	0	2	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	c0009	5502	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	c0010	5499	1	1	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	c0011	5499	1	1	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	c0012	5499	1	1	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	c0013	5502	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	c0014	5502	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	c0015	5502	1	1	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	c0016	5502	1	0	0	0	0	1	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	c0017	5502	1	0	1	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	c0018	5502	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	c0019	5499	1	1	0	0	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6B_chr22_40172925_40340808	0/0	c0020	5502	1	0	0	1	0	0	copy fasta	TNRC6B	chr22	40172925	40340808
TNRC6C_chr17_77953703_78113822	1/0	c0001	5811	140	35	30	59	4	11	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/1	c0002	5811	39	15	3	15	1	4	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	c0003	5811	36	7	4	23	1	1	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	c0004	5811	11	11	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	c0005	5811	9	9	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	c0006	5811	5	0	1	1	0	3	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	c0007	5811	3	3	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	c0008	5811	3	0	0	3	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	c0009	5811	3	0	3	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	c0010	5811	2	1	1	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	c0011	5811	2	1	1	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	c0012	5812	2	1	0	0	0	1	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	c0013	5812	2	0	0	2	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	c0014	5811	2	1	0	0	0	1	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	c0015	5811	1	1	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	c0016	5811	1	0	1	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	c0017	5812	1	1	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	c0018	5811	1	0	0	1	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	c0019	5811	1	0	0	1	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	c0020	5811	1	1	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	c0021	5812	1	0	1	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	c0022	5812	1	0	0	1	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	c0023	5811	1	1	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	c0024	5811	1	0	0	1	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	c0025	5811	1	0	0	1	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	c0026	5812	1	0	0	1	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	c0027	5811	1	1	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	c0028	5811	1	1	0	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	c0029	5811	1	0	1	0	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	c0030	5812	1	0	0	0	0	1	copy fasta	TNRC6C	chr17	77953703	78113822
TNRC6C_chr17_77953703_78113822	0/0	c0031	5811	1	0	0	1	0	0	copy fasta	TNRC6C	chr17	77953703	78113822
TNR_chr1_175310194_175748595	0/1	c0001	4077	24	4	6	7	1	5	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0002	4077	18	5	5	4	1	3	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0003	4077	10	10	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595