JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BCORL1_chrX_129977635_130063071	0/0	c0006	5358	3	3	0	0	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	c0007	5358	1	0	0	1	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	c0008	5358	1	1	0	0	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	c0009	5358	1	1	0	0	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	c0010	5358	1	0	0	1	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	c0011	5358	1	0	0	0	0	1	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	c0012	5357	1	0	0	1	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	c0013	5358	1	1	0	0	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	c0014	5358	1	1	0	0	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	c0015	5358	1	0	0	1	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	c0016	5358	1	0	0	0	0	1	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	c0017	5358	1	0	1	0	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	c0018	5358	1	0	0	1	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	c0019	5358	1	1	0	0	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	c0020	5358	1	1	0	0	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	c0021	5358	1	1	0	0	0	0	copy fasta	BCORL1	chrX	129977635	130063071
BCORL1_chrX_129977635_130063071	0/0	c0022	5358	1	0	0	0	0	1	copy fasta	BCORL1	chrX	129977635	130063071
BCOR_chrX_40046251_40102958	0/0	c0001	5268	138	59	7	59	1	12	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/1	c0002	5268	75	3	26	32	6	7	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	1/0	c0003	5268	14	3	1	4	0	5	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	c0004	5268	7	0	0	7	0	0	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	c0005	5268	4	1	2	0	1	0	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	c0006	5268	4	4	0	0	0	0	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	c0007	5265	2	0	0	2	0	0	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	c0008	5278	1	0	0	1	0	0	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	c0009	5268	1	0	0	1	0	0	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	c0010	5269	1	0	0	1	0	0	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	c0011	5268	1	1	0	0	0	0	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	c0012	5268	1	1	0	0	0	0	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	c0013	5266	1	0	0	1	0	0	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	c0014	5268	1	0	0	1	0	0	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	c0015	5267	1	0	0	1	0	0	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	c0016	5268	1	0	0	0	0	1	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	c0017	5268	1	0	0	0	1	0	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	c0018	5268	1	0	0	0	0	1	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	c0019	5269	1	0	0	1	0	0	copy fasta	BCOR	chrX	40046251	40102958
BCOR_chrX_40046251_40102958	0/0	c0020	5269	1	0	0	1	0	0	copy fasta	BCOR	chrX	40046251	40102958
BCR_chr22_23175509_23323037	0/0	c0001	3816	53	20	6	19	1	7	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0002	3816	51	22	20	4	3	2	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	1/0	c0003	3816	48	1	10	25	1	10	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0004	3816	45	3	7	25	2	8	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0005	3816	21	6	5	8	1	1	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/1	c0006	3816	11	3	6	0	1	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0007	3816	8	0	0	6	2	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0008	3816	5	0	5	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0009	3816	4	1	0	0	2	1	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0010	3816	4	3	1	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0011	3816	3	3	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0012	3816	3	3	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0013	3816	3	2	1	0	0	0	copy fasta	BCR	chr22	23175509	23323037