JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TNR_chr1_175310194_175748595	0/0	c0004	4077	7	5	2	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0005	4077	7	7	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0006	4077	6	2	1	2	0	1	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0007	4077	6	0	2	2	0	2	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0008	4077	5	5	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0009	4077	5	0	0	5	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0010	4077	3	3	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0011	4077	3	0	2	1	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0012	4077	3	3	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0013	4077	2	1	1	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0014	4077	2	0	0	0	2	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0015	4077	2	0	2	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0016	4077	2	2	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0017	4077	1	0	0	0	0	1	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0018	4077	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0019	4077	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0020	4077	1	0	0	0	1	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0021	4077	1	0	1	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0022	4077	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0023	4077	1	0	1	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0024	4077	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	1/0	c0025	4077	1	0	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0026	4077	1	0	0	0	0	1	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0027	4077	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0028	4077	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0029	4077	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0030	4077	1	0	0	1	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0031	4077	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0032	4077	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0033	4077	1	0	1	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0034	4077	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0035	4077	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0036	4077	1	0	0	0	1	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0037	4077	1	0	0	1	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0038	4077	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0039	4077	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0040	4077	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0041	4077	1	1	0	0	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0042	4077	1	0	0	1	0	0	copy fasta	TNR	chr1	175310194	175748595
TNR_chr1_175310194_175748595	0/0	c0043	4077	1	0	0	0	0	1	copy fasta	TNR	chr1	175310194	175748595
TNS1_chr2_217794791_218007995	0/0	c0001	5520	16	2	8	5	0	1	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	c0002	5520	14	0	3	7	1	3	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	c0003	5520	12	2	3	3	1	3	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/1	c0004	5520	8	2	0	5	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	c0005	5520	5	1	2	2	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	c0006	5520	5	0	3	1	1	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	c0007	5520	5	0	0	5	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	c0008	5520	5	0	0	5	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	c0009	5520	4	3	1	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	c0010	5520	4	0	2	2	0	0	copy fasta	TNS1	chr2	217794791	218007995