JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TNS1_chr2_217794791_218007995	0/0	c0111	5520	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	c0112	5520	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	c0113	5520	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	c0114	5520	1	0	0	0	1	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	c0115	5520	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	c0116	5520	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	c0117	5520	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	c0118	5520	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	c0119	5520	1	0	0	0	0	1	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	c0120	5520	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	c0121	5520	1	1	0	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	c0122	5520	1	0	0	0	0	1	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	c0123	5520	1	0	0	0	0	1	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	c0124	5520	1	0	0	0	0	1	copy fasta	TNS1	chr2	217794791	218007995
TNS1_chr2_217794791_218007995	0/0	c0125	5520	1	0	1	0	0	0	copy fasta	TNS1	chr2	217794791	218007995
TNS2_chr12_53045065_53069379	1/1	c0001	4230	314	77	67	124	7	37	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0002	4230	17	0	0	17	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0003	4230	9	0	0	9	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0004	4230	7	1	0	6	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0005	4230	7	5	0	0	0	2	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0006	4230	5	0	0	5	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0007	4230	3	0	1	0	1	1	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0008	4230	3	0	1	1	1	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0009	4230	2	0	0	2	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0010	4230	2	0	1	1	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0011	4230	2	0	0	0	0	2	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0012	4230	2	2	0	0	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0013	4230	2	0	2	0	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0014	4230	1	0	0	1	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0015	4230	1	1	0	0	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0016	4230	1	0	0	1	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0017	4230	1	0	0	1	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0018	4230	1	0	0	1	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0019	4230	1	0	0	1	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0020	4230	1	0	0	1	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0021	4230	1	1	0	0	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0022	4230	1	1	0	0	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0023	4230	1	0	0	0	0	1	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0024	4230	1	0	0	1	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0025	4230	1	0	0	1	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0026	4230	1	0	0	1	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0027	4230	1	1	0	0	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0028	4230	1	0	0	1	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0029	4230	1	1	0	0	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0030	4230	1	0	0	0	1	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0031	4230	1	1	0	0	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0032	4230	1	0	0	0	0	1	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0033	4230	1	0	0	1	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0034	4230	1	1	0	0	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0035	4230	1	0	0	1	0	0	copy fasta	TNS2	chr12	53045065	53069379