JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TNS2_chr12_53045065_53069379	0/0	c0036	4230	1	0	0	1	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0037	4230	1	0	0	1	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0038	4230	1	0	0	1	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0039	4230	1	0	0	1	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0040	4230	1	1	0	0	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0041	4230	1	1	0	0	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0042	4230	1	1	0	0	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0043	4230	1	1	0	0	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS2_chr12_53045065_53069379	0/0	c0044	4230	1	0	0	1	0	0	copy fasta	TNS2	chr12	53045065	53069379
TNS3_chr7_47270154_47587111	0/0	c0001	4338	30	13	4	7	2	4	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0002	4338	28	10	8	3	1	6	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	1/0	c0003	4338	25	11	4	4	2	3	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/1	c0004	4338	16	2	8	2	2	1	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0005	4338	11	1	5	2	3	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0006	4338	5	1	0	3	0	1	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0007	4338	4	2	0	1	0	1	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0008	4338	4	4	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0009	4338	4	0	3	0	1	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0010	4338	3	0	0	3	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0011	4338	3	0	1	2	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0012	4338	3	0	1	1	0	1	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0013	4338	2	1	1	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0014	4338	2	0	0	2	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0015	4338	2	2	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0016	4338	2	2	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0017	4338	2	0	1	0	0	1	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0018	4338	2	2	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0019	4338	2	2	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0020	4338	2	2	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0021	4338	2	1	0	0	0	1	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0022	4338	2	0	0	0	0	2	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0023	4338	1	0	1	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0024	4338	1	0	0	0	0	1	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0025	4338	1	0	0	1	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0026	4338	1	0	0	0	0	1	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0027	4338	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0028	4338	1	0	1	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0029	4338	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0030	4338	1	0	0	1	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0031	4338	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0032	4338	1	0	0	1	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0033	4338	1	0	0	0	0	1	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0034	4338	1	0	1	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0035	4338	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0036	4338	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0037	4338	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0038	4338	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0039	4338	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0040	4338	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0041	4338	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111