JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TNS3_chr7_47270154_47587111	0/0	c0042	4338	1	0	0	0	0	1	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0043	4338	1	0	1	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0044	4338	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0045	4338	1	0	0	0	0	1	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0046	4338	1	0	0	0	0	1	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0047	4338	1	0	1	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0048	4338	1	0	1	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0049	4338	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0050	4338	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0051	4338	1	0	0	0	1	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0052	4338	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0053	4338	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0054	4338	1	0	0	1	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0055	4338	1	0	0	0	0	1	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0056	4338	1	0	1	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0057	4338	1	0	0	1	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0058	4338	1	0	0	1	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0059	4338	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0060	4338	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0061	4338	1	0	1	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS3_chr7_47270154_47587111	0/0	c0062	4338	1	1	0	0	0	0	copy fasta	TNS3	chr7	47270154	47587111
TNS4_chr17_40470834_40506623	1/0	c0001	2148	215	41	42	89	14	28	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/1	c0002	2148	109	11	23	54	2	18	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	c0003	2148	28	25	2	0	1	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	c0004	2148	10	8	2	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	c0005	2148	6	0	0	6	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	c0006	2148	3	3	0	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	c0007	2148	3	3	0	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	c0008	2148	2	2	0	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	c0009	2148	2	2	0	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	c0010	2148	2	0	2	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	c0011	2148	2	0	2	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	c0012	2148	1	0	0	1	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	c0013	2148	1	0	1	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	c0014	2148	1	1	0	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	c0015	2148	1	0	0	1	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	c0016	2148	1	0	0	1	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	c0017	2148	1	0	1	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	c0018	2148	1	0	0	1	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	c0019	2148	1	0	0	0	1	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	c0020	2148	1	0	0	1	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNS4_chr17_40470834_40506623	0/0	c0021	2148	1	0	1	0	0	0	copy fasta	TNS4	chr17	40470834	40506623
TNXB_chr6_32036153_32114338	0/1	c0001	12735	46	0	14	26	2	3	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0002	12735	27	0	2	22	0	3	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0003	12735	19	0	0	19	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0004	12735	14	8	6	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0005	12735	14	1	0	13	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0006	12735	12	5	0	2	1	4	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0007	12735	12	0	3	8	1	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0008	12735	10	8	2	0	0	0	copy fasta	TNXB	chr6	32036153	32114338