JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TNXB_chr6_32036153_32114338	0/0	c0009	12735	10	2	4	1	1	2	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0010	12735	10	4	4	0	2	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0011	12735	9	2	2	4	0	1	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0012	12735	8	0	3	5	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0013	12735	7	0	0	7	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0014	12735	6	0	1	5	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0015	12735	6	3	0	2	0	1	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0016	12735	6	0	0	6	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0017	12735	5	1	3	0	0	1	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0018	12735	5	0	3	2	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0019	12735	5	0	5	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0020	12735	5	0	0	5	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0021	12735	5	1	4	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0022	12402	5	5	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0023	12735	5	0	0	5	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0024	12735	5	0	1	4	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0025	12735	4	1	0	3	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0026	12735	4	0	0	0	0	4	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0027	12735	4	4	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0028	12735	4	0	3	0	1	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0029	12735	3	0	0	1	0	2	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0030	12735	3	0	0	3	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0031	12735	3	0	0	3	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0032	12735	3	0	2	0	0	1	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0033	12735	3	0	3	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0034	12735	3	1	1	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0035	12735	3	3	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0036	12735	2	0	0	2	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0037	12735	2	2	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0038	12735	2	0	0	2	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0039	12735	2	0	0	2	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0040	12735	2	1	1	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0041	12735	2	0	0	0	0	2	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0042	12735	2	2	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0043	12735	2	2	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0044	12735	2	0	0	0	0	2	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0045	12735	2	1	0	0	1	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0046	12735	2	0	0	0	0	2	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0047	12735	2	0	0	2	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0048	12735	2	0	0	2	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0049	12735	2	0	0	0	2	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0050	12735	2	1	1	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0051	12735	2	0	2	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0052	12735	2	2	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0053	12735	1	0	0	0	0	1	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0054	12735	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0055	12735	1	0	1	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0056	12735	1	0	0	0	0	1	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0057	12735	1	0	0	0	0	1	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0058	12735	1	0	0	0	0	1	copy fasta	TNXB	chr6	32036153	32114338