JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TNXB_chr6_32036153_32114338	0/0	c0059	12735	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0060	12735	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0061	12735	1	0	0	0	0	1	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0062	12735	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0063	12735	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0064	12735	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0065	12735	1	0	0	0	0	1	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0066	12735	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0067	12735	1	0	1	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0068	12735	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0069	12735	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0070	12735	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0071	12735	1	0	0	0	1	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0072	12735	1	0	0	0	1	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0073	12735	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0074	12735	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0075	12735	1	0	0	0	0	1	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0076	12735	1	0	1	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0077	12735	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0078	12735	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0079	12735	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0080	12735	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0081	12735	1	0	0	0	1	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0082	12735	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0083	12735	1	0	0	0	0	1	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0084	12735	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0085	12735	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0086	12750	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0087	12735	1	0	0	0	0	1	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0088	12735	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0089	12735	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0090	12735	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0091	12735	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0092	12735	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0093	12735	1	0	0	0	1	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0094	12735	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0095	12735	1	0	1	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0096	12735	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0097	12735	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0098	12735	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0099	12735	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0100	12735	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0101	12735	1	0	0	0	1	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0102	12735	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0103	12735	1	0	1	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0104	12735	1	0	0	0	1	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0105	12735	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0106	12735	1	0	0	0	0	1	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0107	12735	1	0	0	0	0	1	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0108	12645	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338