JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TNXB_chr6_32036153_32114338	0/0	c0109	12735	1	0	0	0	0	1	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0110	12735	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0111	12735	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0112	12735	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0113	12735	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0114	12735	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0115	12735	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0116	12735	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0117	12735	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0118	12735	1	0	1	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0119	12735	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0120	12735	1	0	0	1	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0121	12735	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0122	12735	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0123	12735	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0124	12735	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0125	12735	1	1	0	0	0	0	copy fasta	TNXB	chr6	32036153	32114338
TNXB_chr6_32036153_32114338	0/0	c0126	12735	1	0	0	0	1	0	copy fasta	TNXB	chr6	32036153	32114338
TOB1_chr17_50857223_50871354	0/1	c0001	1038	238	64	41	96	7	29	copy fasta	TOB1	chr17	50857223	50871354
TOB1_chr17_50857223_50871354	1/0	c0002	1038	172	30	35	88	7	11	copy fasta	TOB1	chr17	50857223	50871354
TOB1_chr17_50857223_50871354	0/0	c0003	1039	5	2	0	3	0	0	copy fasta	TOB1	chr17	50857223	50871354
TOB1_chr17_50857223_50871354	0/0	c0004	1039	3	2	0	1	0	0	copy fasta	TOB1	chr17	50857223	50871354
TOB1_chr17_50857223_50871354	0/0	c0005	1038	1	0	0	1	0	0	copy fasta	TOB1	chr17	50857223	50871354
TOB1_chr17_50857223_50871354	0/0	c0006	1048	1	0	0	1	0	0	copy fasta	TOB1	chr17	50857223	50871354
TOB2_chr22_41428494_41451801	0/1	c0001	1035	266	57	32	145	8	23	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	1/0	c0002	1035	84	28	27	14	3	11	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	c0003	1035	3	2	1	0	0	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	c0004	1035	1	1	0	0	0	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	c0005	1035	1	0	0	0	1	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	c0006	1035	1	0	0	1	0	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	c0007	1035	1	1	0	0	0	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	c0008	1035	1	1	0	0	0	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	c0009	1035	1	0	1	0	0	0	copy fasta	TOB2	chr22	41428494	41451801
TOB2_chr22_41428494_41451801	0/0	c0010	1035	1	0	1	0	0	0	copy fasta	TOB2	chr22	41428494	41451801
TOE1_chr1_45335170_45348973	1/1	c0001	1533	386	84	65	185	17	33	copy fasta	TOE1	chr1	45335170	45348973
TOE1_chr1_45335170_45348973	0/0	c0002	1533	9	0	9	0	0	0	copy fasta	TOE1	chr1	45335170	45348973
TOE1_chr1_45335170_45348973	0/0	c0003	1533	3	3	0	0	0	0	copy fasta	TOE1	chr1	45335170	45348973
TOE1_chr1_45335170_45348973	0/0	c0004	1533	1	1	0	0	0	0	copy fasta	TOE1	chr1	45335170	45348973
TOE1_chr1_45335170_45348973	0/0	c0005	1533	1	1	0	0	0	0	copy fasta	TOE1	chr1	45335170	45348973
TOE1_chr1_45335170_45348973	0/0	c0006	1533	1	0	0	1	0	0	copy fasta	TOE1	chr1	45335170	45348973
TOE1_chr1_45335170_45348973	0/0	c0007	1533	1	0	0	0	1	0	copy fasta	TOE1	chr1	45335170	45348973
TOE1_chr1_45335170_45348973	0/0	c0008	1533	1	1	0	0	0	0	copy fasta	TOE1	chr1	45335170	45348973
TOE1_chr1_45335170_45348973	0/0	c0009	1533	1	1	0	0	0	0	copy fasta	TOE1	chr1	45335170	45348973
TOE1_chr1_45335170_45348973	0/0	c0010	1533	1	1	0	0	0	0	copy fasta	TOE1	chr1	45335170	45348973
TOE1_chr1_45335170_45348973	0/0	c0011	1533	1	0	0	1	0	0	copy fasta	TOE1	chr1	45335170	45348973
TOE1_chr1_45335170_45348973	0/0	c0012	1533	1	0	0	1	0	0	copy fasta	TOE1	chr1	45335170	45348973
TOE1_chr1_45335170_45348973	0/0	c0013	1533	1	0	0	0	0	1	copy fasta	TOE1	chr1	45335170	45348973
TOGARAM1_chr14_44957190_45079431	1/1	c0001	5322	94	30	14	32	4	12	copy fasta	TOGARAM1	chr14	44957190	45079431
TOGARAM1_chr14_44957190_45079431	0/0	c0002	5322	29	0	1	23	3	2	copy fasta	TOGARAM1	chr14	44957190	45079431
TOGARAM1_chr14_44957190_45079431	0/0	c0003	5322	21	18	2	0	1	0	copy fasta	TOGARAM1	chr14	44957190	45079431