JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TOGARAM1_chr14_44957190_45079431	0/0	c0004	5322	15	14	1	0	0	0	copy fasta	TOGARAM1	chr14	44957190	45079431
TOGARAM1_chr14_44957190_45079431	0/0	c0005	5322	3	3	0	0	0	0	copy fasta	TOGARAM1	chr14	44957190	45079431
TOGARAM1_chr14_44957190_45079431	0/0	c0006	5322	3	3	0	0	0	0	copy fasta	TOGARAM1	chr14	44957190	45079431
TOGARAM1_chr14_44957190_45079431	0/0	c0007	5322	2	2	0	0	0	0	copy fasta	TOGARAM1	chr14	44957190	45079431
TOGARAM1_chr14_44957190_45079431	0/0	c0008	5322	2	2	0	0	0	0	copy fasta	TOGARAM1	chr14	44957190	45079431
TOGARAM1_chr14_44957190_45079431	0/0	c0009	5322	2	0	0	2	0	0	copy fasta	TOGARAM1	chr14	44957190	45079431
TOGARAM1_chr14_44957190_45079431	0/0	c0010	5322	1	1	0	0	0	0	copy fasta	TOGARAM1	chr14	44957190	45079431
TOGARAM1_chr14_44957190_45079431	0/0	c0011	5322	1	1	0	0	0	0	copy fasta	TOGARAM1	chr14	44957190	45079431
TOGARAM1_chr14_44957190_45079431	0/0	c0012	5322	1	1	0	0	0	0	copy fasta	TOGARAM1	chr14	44957190	45079431
TOGARAM1_chr14_44957190_45079431	0/0	c0013	5322	1	0	0	1	0	0	copy fasta	TOGARAM1	chr14	44957190	45079431
TOGARAM1_chr14_44957190_45079431	0/0	c0014	5322	1	1	0	0	0	0	copy fasta	TOGARAM1	chr14	44957190	45079431
TOGARAM1_chr14_44957190_45079431	0/0	c0015	5322	1	0	0	0	0	1	copy fasta	TOGARAM1	chr14	44957190	45079431
TOGARAM1_chr14_44957190_45079431	0/0	c0016	5322	1	0	0	0	0	1	copy fasta	TOGARAM1	chr14	44957190	45079431
TOGARAM2_chr2_28976298_29057230	0/0	c0001	3060	46	0	7	39	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	1/0	c0002	3060	34	8	5	12	0	8	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0003	3060	26	3	6	5	5	7	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0004	3060	17	1	6	0	4	6	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0005	3060	16	0	0	15	0	1	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0006	3060	10	4	4	0	1	1	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/1	c0007	3060	10	0	1	4	0	4	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0008	3060	9	0	2	6	1	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0009	3060	8	0	0	8	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0010	3060	7	2	3	0	1	1	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0011	3060	6	0	0	5	0	1	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0012	3060	6	3	3	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0013	3060	6	2	3	1	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0014	3060	5	3	0	2	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0015	3060	5	0	1	0	0	4	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0016	3060	5	0	2	3	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0017	3060	4	0	0	4	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0018	3072	4	4	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0019	3060	4	0	0	4	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0020	3060	4	0	0	4	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0021	3060	4	2	0	2	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0022	3060	3	0	0	3	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0023	3060	3	3	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0024	3060	3	0	0	3	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0025	3060	3	0	0	3	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0026	3060	3	3	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0027	3060	3	3	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0028	3060	3	0	3	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0029	3060	3	1	0	2	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0030	3060	2	1	1	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0031	3060	2	0	2	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0032	3060	2	2	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0033	3060	2	2	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0034	3060	2	2	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0035	3060	2	1	1	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0036	3060	2	0	0	2	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0037	3060	2	0	0	2	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230