JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
BCR_chr22_23175509_23323037	0/0	c0014	3816	3	0	3	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0015	3816	2	0	0	0	0	2	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0016	3816	2	0	0	2	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0017	3816	2	2	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0018	3816	2	2	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0019	3816	2	2	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0020	3816	2	2	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0021	3816	2	2	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0022	3816	2	2	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0023	3816	1	0	1	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0024	3816	1	1	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0025	3816	1	0	1	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0026	3816	1	1	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0027	3816	1	0	0	1	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0028	3816	1	1	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0029	3816	1	0	0	1	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0030	3816	1	1	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0031	3816	1	0	0	1	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0032	3816	1	1	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0033	3816	1	1	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0034	3816	1	0	0	1	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0035	3816	1	0	0	0	0	1	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0036	3816	1	0	0	1	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0037	3816	1	1	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0038	3816	1	1	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0039	3816	1	0	0	0	1	0	copy fasta	BCR	chr22	23175509	23323037
BCR_chr22_23175509_23323037	0/0	c0040	3816	1	1	0	0	0	0	copy fasta	BCR	chr22	23175509	23323037
BCS1L_chr2_218654683_218668443	1/1	c0001	1260	268	50	53	115	12	36	copy fasta	BCS1L	chr2	218654683	218668443
BCS1L_chr2_218654683_218668443	0/0	c0002	1260	52	12	1	35	0	4	copy fasta	BCS1L	chr2	218654683	218668443
BCS1L_chr2_218654683_218668443	0/0	c0003	1260	17	17	0	0	0	0	copy fasta	BCS1L	chr2	218654683	218668443
BCS1L_chr2_218654683_218668443	0/0	c0004	1260	14	13	1	0	0	0	copy fasta	BCS1L	chr2	218654683	218668443
BCS1L_chr2_218654683_218668443	0/0	c0005	1260	2	0	2	0	0	0	copy fasta	BCS1L	chr2	218654683	218668443
BCS1L_chr2_218654683_218668443	0/0	c0006	1260	1	0	0	1	0	0	copy fasta	BCS1L	chr2	218654683	218668443
BCS1L_chr2_218654683_218668443	0/0	c0007	1260	1	1	0	0	0	0	copy fasta	BCS1L	chr2	218654683	218668443
BCS1L_chr2_218654683_218668443	0/0	c0008	1260	1	0	0	1	0	0	copy fasta	BCS1L	chr2	218654683	218668443
BCS1L_chr2_218654683_218668443	0/0	c0009	1260	1	1	0	0	0	0	copy fasta	BCS1L	chr2	218654683	218668443
BCS1L_chr2_218654683_218668443	0/0	c0010	1260	1	0	1	0	0	0	copy fasta	BCS1L	chr2	218654683	218668443
BDH1_chr3_197504783_197560968	0/1	c0001	1032	283	67	65	102	12	36	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	c0002	1032	16	10	3	0	0	3	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	c0003	1032	6	4	2	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	c0004	1032	5	4	1	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	c0005	1032	2	1	1	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	c0006	1032	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	c0007	1032	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	c0008	1032	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	c0009	1032	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	c0010	1032	1	0	0	0	0	1	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	c0011	1032	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH1_chr3_197504783_197560968	0/0	c0012	1032	1	1	0	0	0	0	copy fasta	BDH1	chr3	197504783	197560968
BDH2_chr4_103072592_103104834	1/1	c0001	738	294	74	44	137	7	30	copy fasta	BDH2	chr4	103072592	103104834