JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TOGARAM2_chr2_28976298_29057230	0/0	c0088	3060	1	0	0	1	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0089	3060	1	0	0	1	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0090	3060	1	1	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0091	3060	1	0	1	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0092	3060	1	1	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0093	3060	1	0	0	1	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0094	3060	1	0	1	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0095	3060	1	1	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0096	3060	1	1	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0097	3060	1	1	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0098	3060	1	1	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0099	3060	1	1	0	0	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOGARAM2_chr2_28976298_29057230	0/0	c0100	3060	1	0	0	1	0	0	copy fasta	TOGARAM2	chr2	28976298	29057230
TOLLIP_chr11_1269371_1314632	1/1	c0001	825	217	64	49	83	6	13	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	c0002	825	109	19	18	38	7	27	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	c0003	825	5	0	1	0	1	3	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	c0004	825	3	3	0	0	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	c0005	825	2	2	0	0	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	c0006	839	1	0	0	1	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	c0007	825	1	0	1	0	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	c0008	825	1	0	0	1	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	c0009	825	1	1	0	0	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	c0010	825	1	1	0	0	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	c0011	825	1	1	0	0	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	c0012	825	1	0	1	0	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	c0013	825	1	0	0	1	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	c0014	825	1	0	0	0	0	1	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	c0015	825	1	1	0	0	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	c0016	825	1	0	1	0	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOLLIP_chr11_1269371_1314632	0/0	c0017	825	1	0	1	0	0	0	copy fasta	TOLLIP	chr11	1269371	1314632
TOM1L1_chr17_54895852_54966956	1/1	c0001	1431	387	89	70	179	12	35	copy fasta	TOM1L1	chr17	54895852	54966956
TOM1L1_chr17_54895852_54966956	0/0	c0002	1431	1	0	0	1	0	0	copy fasta	TOM1L1	chr17	54895852	54966956
TOM1L1_chr17_54895852_54966956	0/0	c0003	1431	1	0	0	0	0	1	copy fasta	TOM1L1	chr17	54895852	54966956
TOM1L1_chr17_54895852_54966956	0/0	c0004	1431	1	1	0	0	0	0	copy fasta	TOM1L1	chr17	54895852	54966956
TOM1L1_chr17_54895852_54966956	0/0	c0005	1431	1	1	0	0	0	0	copy fasta	TOM1L1	chr17	54895852	54966956
TOM1L1_chr17_54895852_54966956	0/0	c0006	1431	1	1	0	0	0	0	copy fasta	TOM1L1	chr17	54895852	54966956
TOM1L2_chr17_17838511_17977400	1/1	c0001	1524	235	82	55	73	8	15	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	c0002	1524	2	1	1	0	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	c0003	1524	1	0	0	0	0	1	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	c0004	1524	1	1	0	0	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1L2_chr17_17838511_17977400	0/0	c0005	1524	1	0	0	1	0	0	copy fasta	TOM1L2	chr17	17838511	17977400
TOM1_chr22_35294894_35352973	1/0	c0001	1479	229	24	46	128	6	24	copy fasta	TOM1	chr22	35294894	35352973
TOM1_chr22_35294894_35352973	0/1	c0002	1479	111	52	20	25	4	9	copy fasta	TOM1	chr22	35294894	35352973
TOM1_chr22_35294894_35352973	0/0	c0003	1479	6	4	0	2	0	0	copy fasta	TOM1	chr22	35294894	35352973
TOM1_chr22_35294894_35352973	0/0	c0004	1479	2	1	1	0	0	0	copy fasta	TOM1	chr22	35294894	35352973
TOM1_chr22_35294894_35352973	0/0	c0005	1479	1	0	1	0	0	0	copy fasta	TOM1	chr22	35294894	35352973
TOM1_chr22_35294894_35352973	0/0	c0006	1479	1	1	0	0	0	0	copy fasta	TOM1	chr22	35294894	35352973
TOM1_chr22_35294894_35352973	0/0	c0007	1479	1	0	0	1	0	0	copy fasta	TOM1	chr22	35294894	35352973
TOM1_chr22_35294894_35352973	0/0	c0008	1479	1	0	1	0	0	0	copy fasta	TOM1	chr22	35294894	35352973
TOM1_chr22_35294894_35352973	0/0	c0009	1479	1	0	1	0	0	0	copy fasta	TOM1	chr22	35294894	35352973