JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TOM1_chr22_35294894_35352973	0/0	c0010	1479	1	0	1	0	0	0	copy fasta	TOM1	chr22	35294894	35352973
TOM1_chr22_35294894_35352973	0/0	c0011	1479	1	0	0	0	0	1	copy fasta	TOM1	chr22	35294894	35352973
TOM1_chr22_35294894_35352973	0/0	c0012	1479	1	0	1	0	0	0	copy fasta	TOM1	chr22	35294894	35352973
TOM1_chr22_35294894_35352973	0/0	c0013	1479	1	1	0	0	0	0	copy fasta	TOM1	chr22	35294894	35352973
TOM1_chr22_35294894_35352973	0/0	c0014	1479	1	1	0	0	0	0	copy fasta	TOM1	chr22	35294894	35352973
TOMM20L_chr14_58390930_58413702	1/1	c0001	459	358	88	55	163	10	40	copy fasta	TOMM20L	chr14	58390930	58413702
TOMM20L_chr14_58390930_58413702	0/0	c0002	459	1	1	0	0	0	0	copy fasta	TOMM20L	chr14	58390930	58413702
TOMM20L_chr14_58390930_58413702	0/0	c0003	459	1	0	0	1	0	0	copy fasta	TOMM20L	chr14	58390930	58413702
TOMM20L_chr14_58390930_58413702	0/0	c0004	459	1	1	0	0	0	0	copy fasta	TOMM20L	chr14	58390930	58413702
TOMM20L_chr14_58390930_58413702	0/0	c0005	459	1	0	1	0	0	0	copy fasta	TOMM20L	chr14	58390930	58413702
TOMM20_chr1_235104341_235133837	1/1	c0001	438	398	90	78	176	14	38	copy fasta	TOMM20	chr1	235104341	235133837
TOMM22_chr22_38676957_38690421	1/1	c0001	429	379	92	58	173	10	44	copy fasta	TOMM22	chr22	38676957	38690421
TOMM22_chr22_38676957_38690421	0/0	c0002	429	2	0	0	2	0	0	copy fasta	TOMM22	chr22	38676957	38690421
TOMM22_chr22_38676957_38690421	0/0	c0003	429	2	0	0	2	0	0	copy fasta	TOMM22	chr22	38676957	38690421
TOMM22_chr22_38676957_38690421	0/0	c0004	429	1	0	0	1	0	0	copy fasta	TOMM22	chr22	38676957	38690421
TOMM34_chr20_44937130_44965397	1/1	c0001	930	331	56	66	147	14	46	copy fasta	TOMM34	chr20	44937130	44965397
TOMM34_chr20_44937130_44965397	0/0	c0002	930	72	38	6	26	0	2	copy fasta	TOMM34	chr20	44937130	44965397
TOMM34_chr20_44937130_44965397	0/0	c0003	930	4	0	0	4	0	0	copy fasta	TOMM34	chr20	44937130	44965397
TOMM34_chr20_44937130_44965397	0/0	c0004	930	2	0	0	0	2	0	copy fasta	TOMM34	chr20	44937130	44965397
TOMM34_chr20_44937130_44965397	0/0	c0005	930	2	0	0	0	2	0	copy fasta	TOMM34	chr20	44937130	44965397
TOMM34_chr20_44937130_44965397	0/0	c0006	930	2	2	0	0	0	0	copy fasta	TOMM34	chr20	44937130	44965397
TOMM34_chr20_44937130_44965397	0/0	c0007	930	1	0	0	1	0	0	copy fasta	TOMM34	chr20	44937130	44965397
TOMM40L_chr1_161221060_161235746	1/1	c0001	927	444	90	78	208	16	50	copy fasta	TOMM40L	chr1	161221060	161235746
TOMM40L_chr1_161221060_161235746	0/0	c0002	927	1	0	0	1	0	0	copy fasta	TOMM40L	chr1	161221060	161235746
TOMM40L_chr1_161221060_161235746	0/0	c0003	927	1	0	0	1	0	0	copy fasta	TOMM40L	chr1	161221060	161235746
TOMM40_chr19_44886254_44908689	1/1	c0001	1086	263	36	61	116	13	35	copy fasta	TOMM40	chr19	44886254	44908689
TOMM40_chr19_44886254_44908689	0/0	c0002	1086	61	30	13	17	0	1	copy fasta	TOMM40	chr19	44886254	44908689
TOMM40_chr19_44886254_44908689	0/0	c0003	1086	42	11	6	20	1	4	copy fasta	TOMM40	chr19	44886254	44908689
TOMM40_chr19_44886254_44908689	0/0	c0004	1086	28	11	4	12	0	1	copy fasta	TOMM40	chr19	44886254	44908689
TOMM40_chr19_44886254_44908689	0/0	c0005	1086	6	4	1	0	0	1	copy fasta	TOMM40	chr19	44886254	44908689
TOMM40_chr19_44886254_44908689	0/0	c0006	1086	2	1	0	1	0	0	copy fasta	TOMM40	chr19	44886254	44908689
TOMM40_chr19_44886254_44908689	0/0	c0007	1086	2	0	0	2	0	0	copy fasta	TOMM40	chr19	44886254	44908689
TOMM40_chr19_44886254_44908689	0/0	c0008	1086	1	1	0	0	0	0	copy fasta	TOMM40	chr19	44886254	44908689
TOMM40_chr19_44886254_44908689	0/0	c0009	1086	1	0	1	0	0	0	copy fasta	TOMM40	chr19	44886254	44908689
TOMM40_chr19_44886254_44908689	0/0	c0010	1086	1	1	0	0	0	0	copy fasta	TOMM40	chr19	44886254	44908689
TOMM40_chr19_44886254_44908689	0/0	c0011	1086	1	1	0	0	0	0	copy fasta	TOMM40	chr19	44886254	44908689
TOMM40_chr19_44886254_44908689	0/0	c0012	1086	1	0	1	0	0	0	copy fasta	TOMM40	chr19	44886254	44908689
TOMM40_chr19_44886254_44908689	0/0	c0013	1086	1	0	1	0	0	0	copy fasta	TOMM40	chr19	44886254	44908689
TOMM40_chr19_44886254_44908689	0/0	c0014	1086	1	1	0	0	0	0	copy fasta	TOMM40	chr19	44886254	44908689
TOMM40_chr19_44886254_44908689	0/0	c0015	1086	1	1	0	0	0	0	copy fasta	TOMM40	chr19	44886254	44908689
TOMM5_chr9_37583413_37597597	1/1	c0001	156	301	65	52	128	12	42	copy fasta	TOMM5	chr9	37583413	37597597
TOMM5_chr9_37583413_37597597	0/0	c0002	156	54	31	18	0	3	2	copy fasta	TOMM5	chr9	37583413	37597597
TOMM5_chr9_37583413_37597597	0/0	c0003	156	1	0	0	0	1	0	copy fasta	TOMM5	chr9	37583413	37597597
TOMM6_chr6_41782694_41794895	1/1	c0001	225	448	96	82	206	16	46	copy fasta	TOMM6	chr6	41782694	41794895
TOMM6_chr6_41782694_41794895	0/0	c0002	225	1	0	0	1	0	0	copy fasta	TOMM6	chr6	41782694	41794895
TOMM6_chr6_41782694_41794895	0/0	c0003	225	1	0	0	1	0	0	copy fasta	TOMM6	chr6	41782694	41794895
TOMM70_chr3_100358431_100406089	1/1	c0001	1827	271	55	53	111	11	39	copy fasta	TOMM70	chr3	100358431	100406089
TOMM70_chr3_100358431_100406089	0/0	c0002	1827	97	20	12	63	0	2	copy fasta	TOMM70	chr3	100358431	100406089
TOMM70_chr3_100358431_100406089	0/0	c0003	1827	16	3	1	9	0	3	copy fasta	TOMM70	chr3	100358431	100406089
TOMM70_chr3_100358431_100406089	0/0	c0004	1827	4	3	1	0	0	0	copy fasta	TOMM70	chr3	100358431	100406089