JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TOMM70_chr3_100358431_100406089	0/0	c0005	1827	4	0	2	0	1	1	copy fasta	TOMM70	chr3	100358431	100406089
TOMM70_chr3_100358431_100406089	0/0	c0006	1827	2	0	2	0	0	0	copy fasta	TOMM70	chr3	100358431	100406089
TOMM70_chr3_100358431_100406089	0/0	c0007	1827	1	0	0	1	0	0	copy fasta	TOMM70	chr3	100358431	100406089
TOMM70_chr3_100358431_100406089	0/0	c0008	1827	1	0	0	0	0	1	copy fasta	TOMM70	chr3	100358431	100406089
TOMM70_chr3_100358431_100406089	0/0	c0009	1827	1	1	0	0	0	0	copy fasta	TOMM70	chr3	100358431	100406089
TOMM70_chr3_100358431_100406089	0/0	c0010	1827	1	0	1	0	0	0	copy fasta	TOMM70	chr3	100358431	100406089
TOMM7_chr7_22807974_22827849	0/0	c0001	168	420	90	74	192	16	48	copy fasta	TOMM7	chr7	22807974	22827849
TOMT_chr11_72100924_72114596	1/1	c0001	777	393	93	73	176	8	41	copy fasta	TOMT	chr11	72100924	72114596
TOMT_chr11_72100924_72114596	0/0	c0002	777	2	0	0	2	0	0	copy fasta	TOMT	chr11	72100924	72114596
TOMT_chr11_72100924_72114596	0/0	c0003	777	1	0	0	1	0	0	copy fasta	TOMT	chr11	72100924	72114596
TOMT_chr11_72100924_72114596	0/0	c0004	777	1	1	0	0	0	0	copy fasta	TOMT	chr11	72100924	72114596
TOMT_chr11_72100924_72114596	0/0	c0005	777	1	1	0	0	0	0	copy fasta	TOMT	chr11	72100924	72114596
TOMT_chr11_72100924_72114596	0/0	c0006	777	1	0	0	0	0	1	copy fasta	TOMT	chr11	72100924	72114596
TOMT_chr11_72100924_72114596	0/0	c0007	777	1	0	1	0	0	0	copy fasta	TOMT	chr11	72100924	72114596
TOMT_chr11_72100924_72114596	0/0	c0008	777	1	1	0	0	0	0	copy fasta	TOMT	chr11	72100924	72114596
TOMT_chr11_72100924_72114596	0/0	c0009	777	1	0	0	1	0	0	copy fasta	TOMT	chr11	72100924	72114596
TONSL_chr8_144423775_144449440	0/0	c0001	4137	124	25	21	54	1	23	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0002	4137	124	15	33	57	7	12	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0003	4137	59	1	8	50	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0004	4137	19	16	1	2	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0005	4137	6	6	0	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0006	4137	6	6	0	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0007	4137	6	1	3	0	2	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0008	4137	5	5	0	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0009	4137	4	0	0	4	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0010	4137	3	3	0	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0011	4137	3	1	2	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0012	4137	3	0	0	0	0	3	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0013	4137	3	0	0	3	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0014	4137	2	2	0	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0015	4137	2	1	1	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0016	4137	2	2	0	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0017	4137	2	2	0	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0018	4137	2	2	0	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0019	4137	2	0	0	0	2	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0020	4137	2	0	2	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0021	4137	2	0	0	2	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0022	4137	2	0	0	0	0	2	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0023	4137	2	0	2	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0024	4137	2	2	0	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0025	4137	1	0	0	0	0	1	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0026	4137	1	0	0	1	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0027	4137	1	0	0	1	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0028	4137	1	0	0	0	0	1	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0029	4137	1	0	1	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0030	4137	1	0	0	1	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0031	4137	1	1	0	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0032	4137	1	1	0	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0033	4137	1	1	0	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0034	4137	1	0	0	1	0	0	copy fasta	TONSL	chr8	144423775	144449440