JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TONSL_chr8_144423775_144449440	0/0	c0035	4137	1	0	0	1	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0036	4137	1	1	0	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0037	4137	1	1	0	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0038	4137	1	0	0	1	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0039	4137	1	0	0	1	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0040	4137	1	0	0	1	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0041	4137	1	1	0	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0042	4137	1	1	0	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TONSL_chr8_144423775_144449440	0/0	c0043	4137	1	1	0	0	0	0	copy fasta	TONSL	chr8	144423775	144449440
TOP1MT_chr8_143304324_143339880	0/1	c0001	1806	210	5	47	124	7	26	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	c0002	1806	55	22	10	10	4	9	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	1/0	c0003	1806	38	6	8	18	1	4	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	c0004	1806	32	6	7	14	3	2	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	c0005	1806	22	21	1	0	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	c0006	1806	14	4	0	9	1	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	c0007	1806	13	13	0	0	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	c0008	1806	7	0	2	3	0	2	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	c0009	1806	3	2	1	0	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	c0010	1806	3	3	0	0	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	c0011	1806	2	0	0	2	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	c0012	1806	2	0	0	2	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	c0013	1806	2	0	0	0	0	2	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	c0014	1806	2	0	1	0	0	1	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	c0015	1806	2	1	1	0	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	c0016	1806	2	1	1	0	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	c0017	1806	2	2	0	0	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	c0018	1806	1	1	0	0	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	c0019	1806	1	0	0	1	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	c0020	1806	1	0	0	1	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	c0021	1806	1	1	0	0	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	c0022	1806	1	0	0	1	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	c0023	1806	1	0	0	1	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	c0024	1806	1	0	0	1	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	c0025	1806	1	0	1	0	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	c0026	1806	1	0	1	0	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	c0027	1806	1	0	0	1	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	c0028	1806	1	1	0	0	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	c0029	1806	1	0	0	1	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	c0030	1806	1	0	0	1	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	c0031	1806	1	1	0	0	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	c0032	1806	1	1	0	0	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	c0033	1806	1	1	0	0	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	c0034	1806	1	1	0	0	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	c0035	1806	1	1	0	0	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1MT_chr8_143304324_143339880	0/0	c0036	1806	1	0	1	0	0	0	copy fasta	TOP1MT	chr8	143304324	143339880
TOP1_chr20_41023822_41129487	1/1	c0001	2298	371	77	63	181	14	34	copy fasta	TOP1	chr20	41023822	41129487
TOP1_chr20_41023822_41129487	0/0	c0002	2298	5	5	0	0	0	0	copy fasta	TOP1	chr20	41023822	41129487
TOP1_chr20_41023822_41129487	0/0	c0003	2298	1	0	0	1	0	0	copy fasta	TOP1	chr20	41023822	41129487
TOP1_chr20_41023822_41129487	0/0	c0004	2298	1	1	0	0	0	0	copy fasta	TOP1	chr20	41023822	41129487
TOP1_chr20_41023822_41129487	0/0	c0005	2298	1	1	0	0	0	0	copy fasta	TOP1	chr20	41023822	41129487