JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TOP1_chr20_41023822_41129487	0/0	c0006	2298	1	0	1	0	0	0	copy fasta	TOP1	chr20	41023822	41129487
TOP2A_chr17_40383525_40422896	1/1	c0001	4596	235	63	45	87	10	28	copy fasta	TOP2A	chr17	40383525	40422896
TOP2A_chr17_40383525_40422896	0/0	c0002	4596	6	6	0	0	0	0	copy fasta	TOP2A	chr17	40383525	40422896
TOP2A_chr17_40383525_40422896	0/0	c0003	4596	3	1	1	0	1	0	copy fasta	TOP2A	chr17	40383525	40422896
TOP2A_chr17_40383525_40422896	0/0	c0004	4596	3	2	1	0	0	0	copy fasta	TOP2A	chr17	40383525	40422896
TOP2A_chr17_40383525_40422896	0/0	c0005	4596	2	2	0	0	0	0	copy fasta	TOP2A	chr17	40383525	40422896
TOP2A_chr17_40383525_40422896	0/0	c0006	4596	2	1	1	0	0	0	copy fasta	TOP2A	chr17	40383525	40422896
TOP2A_chr17_40383525_40422896	0/0	c0007	4596	1	0	0	0	1	0	copy fasta	TOP2A	chr17	40383525	40422896
TOP2A_chr17_40383525_40422896	0/0	c0008	4596	1	1	0	0	0	0	copy fasta	TOP2A	chr17	40383525	40422896
TOP2A_chr17_40383525_40422896	0/0	c0009	4596	1	0	0	1	0	0	copy fasta	TOP2A	chr17	40383525	40422896
TOP2A_chr17_40383525_40422896	0/0	c0010	4596	1	0	1	0	0	0	copy fasta	TOP2A	chr17	40383525	40422896
TOP2A_chr17_40383525_40422896	0/0	c0011	4596	1	0	1	0	0	0	copy fasta	TOP2A	chr17	40383525	40422896
TOP2A_chr17_40383525_40422896	0/0	c0012	4596	1	1	0	0	0	0	copy fasta	TOP2A	chr17	40383525	40422896
TOP2A_chr17_40383525_40422896	0/0	c0013	4596	1	1	0	0	0	0	copy fasta	TOP2A	chr17	40383525	40422896
TOP2B_chr3_25592984_25669907	1/1	c0001	4881	143	28	35	61	5	12	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	c0002	4881	94	12	30	37	3	12	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	c0003	4881	31	0	0	28	0	3	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	c0004	4881	10	10	0	0	0	0	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	c0005	4881	7	6	1	0	0	0	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	c0006	4881	6	4	2	0	0	0	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	c0007	4881	5	5	0	0	0	0	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	c0008	4881	3	0	3	0	0	0	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	c0009	4881	2	2	0	0	0	0	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	c0010	4881	1	0	0	1	0	0	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	c0011	4881	1	0	0	1	0	0	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	c0012	4881	1	0	1	0	0	0	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	c0013	4881	1	1	0	0	0	0	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	c0014	4881	1	0	0	1	0	0	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	c0015	4881	1	1	0	0	0	0	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	c0016	4881	1	0	0	1	0	0	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	c0017	4881	1	0	0	0	0	1	copy fasta	TOP2B	chr3	25592984	25669907
TOP2B_chr3_25592984_25669907	0/0	c0018	4881	1	1	0	0	0	0	copy fasta	TOP2B	chr3	25592984	25669907
TOP3A_chr17_18266428_18319994	1/1	c0001	3006	274	40	50	141	8	33	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	c0002	3006	56	15	16	16	4	5	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	c0003	3006	13	12	1	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	c0004	3006	12	9	3	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	c0005	3006	7	7	0	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	c0006	3006	6	6	0	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	c0007	3006	5	1	2	2	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	c0008	3006	2	2	0	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	c0009	3006	2	0	0	2	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	c0010	3006	1	0	0	1	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	c0011	3006	1	1	0	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	c0012	3006	1	0	0	1	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	c0013	3006	1	0	0	1	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	c0014	3006	1	0	0	1	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	c0015	3006	1	0	1	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	c0016	3006	1	0	0	1	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	c0017	3006	1	1	0	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	c0018	3006	1	1	0	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994