JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TOP3A_chr17_18266428_18319994	0/0	c0019	3006	1	0	1	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3A_chr17_18266428_18319994	0/0	c0020	3006	1	1	0	0	0	0	copy fasta	TOP3A	chr17	18266428	18319994
TOP3B_chr22_21952025_21987787	0/0	c0001	2589	272	68	47	119	7	31	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	c0002	2589	24	3	9	8	0	4	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	c0003	2589	20	5	7	1	4	3	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	c0004	2589	8	8	0	0	0	0	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	c0005	2589	2	2	0	0	0	0	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	c0006	2589	2	2	0	0	0	0	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	c0007	2589	2	2	0	0	0	0	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	c0008	2589	1	0	0	0	1	0	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	c0009	2589	1	0	0	1	0	0	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	c0010	2589	1	1	0	0	0	0	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	c0011	2589	1	0	0	1	0	0	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	c0012	2589	1	1	0	0	0	0	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	c0013	2589	1	0	0	1	0	0	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	c0014	2589	1	0	0	1	0	0	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	c0015	2589	1	0	0	1	0	0	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	c0016	2589	1	1	0	0	0	0	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	c0017	2589	1	1	0	0	0	0	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	c0018	2589	1	1	0	0	0	0	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	c0019	2589	1	1	0	0	0	0	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	c0020	2589	1	1	0	0	0	0	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	c0021	2589	1	0	0	0	0	1	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	c0022	2589	1	0	1	0	0	0	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	c0023	2589	1	0	0	0	0	1	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	c0024	2589	1	0	0	1	0	0	copy fasta	TOP3B	chr22	21952025	21987787
TOP3B_chr22_21952025_21987787	0/0	c0025	2589	1	1	0	0	0	0	copy fasta	TOP3B	chr22	21952025	21987787
TOPAZ1_chr3_44236886_44337098	0/1	c0001	5079	94	20	26	27	6	14	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	c0002	5079	62	34	15	4	3	6	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	1/0	c0003	5079	45	11	8	20	1	4	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	c0004	5079	10	0	0	10	0	0	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	c0005	5079	7	0	3	0	4	0	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	c0006	5079	7	7	0	0	0	0	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	c0007	5079	5	5	0	0	0	0	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	c0008	5079	4	4	0	0	0	0	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	c0009	5079	2	0	0	0	0	2	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	c0010	5079	2	0	1	0	0	1	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	c0011	5079	2	0	2	0	0	0	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	c0012	5079	2	2	0	0	0	0	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	c0013	5079	1	0	0	0	0	1	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	c0014	5079	1	0	0	0	0	1	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	c0015	5079	1	1	0	0	0	0	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	c0016	5079	1	0	0	0	0	1	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	c0017	5079	1	1	0	0	0	0	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	c0018	5079	1	1	0	0	0	0	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	c0019	5079	1	1	0	0	0	0	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	c0020	5079	1	1	0	0	0	0	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	c0021	5079	1	1	0	0	0	0	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	c0022	5079	1	1	0	0	0	0	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	c0023	5079	1	0	1	0	0	0	copy fasta	TOPAZ1	chr3	44236886	44337098