JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
TOPAZ1_chr3_44236886_44337098	0/0	c0024	5079	1	1	0	0	0	0	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	c0025	5079	1	1	0	0	0	0	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	c0026	5079	1	1	0	0	0	0	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	c0027	5079	1	0	0	1	0	0	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPAZ1_chr3_44236886_44337098	0/0	c0028	5079	1	1	0	0	0	0	copy fasta	TOPAZ1	chr3	44236886	44337098
TOPBP1_chr3_133595238_133666941	0/0	c0001	4569	98	44	8	43	1	2	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	1/0	c0002	4569	71	11	21	30	1	7	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	c0003	4569	53	8	9	28	2	6	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	c0004	4569	32	11	0	20	0	1	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	c0005	4569	32	0	13	5	6	8	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	c0006	4569	17	3	11	0	2	1	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/1	c0007	4569	13	6	2	0	4	0	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	c0008	4569	4	0	0	4	0	0	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	c0009	4569	3	0	0	3	0	0	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	c0010	4569	2	0	0	0	2	0	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	c0011	4569	2	2	0	0	0	0	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	c0012	4569	2	1	1	0	0	0	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	c0013	4569	2	1	0	0	0	1	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	c0014	4569	2	2	0	0	0	0	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	c0015	4569	2	0	2	0	0	0	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	c0016	4569	1	1	0	0	0	0	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	c0017	4569	1	0	0	1	0	0	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	c0018	4569	1	0	1	0	0	0	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	c0019	4569	1	0	0	0	0	1	copy fasta	TOPBP1	chr3	133595238	133666941
TOPBP1_chr3_133595238_133666941	0/0	c0020	4569	1	0	0	0	0	1	copy fasta	TOPBP1	chr3	133595238	133666941
TOPORS_chr9_32535544_32557586	1/1	c0001	3138	276	70	46	129	9	20	copy fasta	TOPORS	chr9	32535544	32557586
TOPORS_chr9_32535544_32557586	0/0	c0002	3138	57	7	12	20	2	16	copy fasta	TOPORS	chr9	32535544	32557586
TOPORS_chr9_32535544_32557586	0/0	c0003	3138	23	6	11	0	4	2	copy fasta	TOPORS	chr9	32535544	32557586
TOPORS_chr9_32535544_32557586	0/0	c0004	3138	6	0	0	6	0	0	copy fasta	TOPORS	chr9	32535544	32557586
TOPORS_chr9_32535544_32557586	0/0	c0005	3138	3	3	0	0	0	0	copy fasta	TOPORS	chr9	32535544	32557586
TOPORS_chr9_32535544_32557586	0/0	c0006	3138	2	2	0	0	0	0	copy fasta	TOPORS	chr9	32535544	32557586
TOPORS_chr9_32535544_32557586	0/0	c0007	3138	2	1	1	0	0	0	copy fasta	TOPORS	chr9	32535544	32557586
TOPORS_chr9_32535544_32557586	0/0	c0008	3138	1	0	1	0	0	0	copy fasta	TOPORS	chr9	32535544	32557586
TOPORS_chr9_32535544_32557586	0/0	c0009	3138	1	0	0	1	0	0	copy fasta	TOPORS	chr9	32535544	32557586
TOPORS_chr9_32535544_32557586	0/0	c0010	3138	1	0	0	1	0	0	copy fasta	TOPORS	chr9	32535544	32557586
TOPORS_chr9_32535544_32557586	0/0	c0011	3138	1	0	0	0	1	0	copy fasta	TOPORS	chr9	32535544	32557586
TOPORS_chr9_32535544_32557586	0/0	c0012	3138	1	0	0	1	0	0	copy fasta	TOPORS	chr9	32535544	32557586
TOPORS_chr9_32535544_32557586	0/0	c0013	3138	1	1	0	0	0	0	copy fasta	TOPORS	chr9	32535544	32557586
TOPORS_chr9_32535544_32557586	0/0	c0014	3138	1	0	1	0	0	0	copy fasta	TOPORS	chr9	32535544	32557586
TOR1AIP1_chr1_179877285_179925076	0/1	c0001	1752	117	22	25	53	2	14	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP1_chr1_179877285_179925076	0/0	c0002	1752	93	40	19	25	6	3	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP1_chr1_179877285_179925076	1/0	c0003	1752	49	17	2	24	1	4	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP1_chr1_179877285_179925076	0/0	c0004	1752	11	1	6	0	3	1	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP1_chr1_179877285_179925076	0/0	c0005	1752	8	7	0	0	0	1	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP1_chr1_179877285_179925076	0/0	c0006	1752	4	4	0	0	0	0	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP1_chr1_179877285_179925076	0/0	c0007	1752	2	0	0	2	0	0	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP1_chr1_179877285_179925076	0/0	c0008	1752	1	1	0	0	0	0	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP1_chr1_179877285_179925076	0/0	c0009	1752	1	1	0	0	0	0	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP1_chr1_179877285_179925076	0/0	c0010	1752	1	0	0	1	0	0	copy fasta	TOR1AIP1	chr1	179877285	179925076
TOR1AIP1_chr1_179877285_179925076	0/0	c0011	1752	1	0	0	1	0	0	copy fasta	TOR1AIP1	chr1	179877285	179925076